Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
CLRN3Q8NCR9 MIR378J-201ENST00000611988 109 ntBASIC2.62□□□□□ -1.99
CLRN3Q8NCR9 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.62□□□□□ -1.99
CLRN3Q8NCR9 MIR6758-201ENST00000620653 63 ntBASIC2.62□□□□□ -1.99
CLRN3Q8NCR9 AC078938.1-201ENST00000620993 318 ntBASIC2.62□□□□□ -1.99
CLRN3Q8NCR9 AP003355.3-201ENST00000623465 114 ntBASIC2.62□□□□□ -1.99
CLRN3Q8NCR9 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.62□□□□□ -1.99
CLRN3Q8NCR9 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
CLRN3Q8NCR9 RNY1-201ENST00000364228 113 ntBASIC2.61□□□□□ -1.99
CLRN3Q8NCR9 RNA5SP130-201ENST00000364431 114 ntBASIC2.61□□□□□ -1.99
CLRN3Q8NCR9 SNORA48.5-201ENST00000391143 135 ntBASIC2.61□□□□□ -1.99
CLRN3Q8NCR9 Y_RNA.625-201ENST00000411256 107 ntBASIC2.61□□□□□ -1.99
CLRN3Q8NCR9 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC2.61□□□□□ -1.99
CLRN3Q8NCR9 AC010409.1-201ENST00000487382 476 ntBASIC2.61□□□□□ -1.99
CLRN3Q8NCR9 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.61□□□□□ -1.99
CLRN3Q8NCR9 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.61□□□□□ -1.99
CLRN3Q8NCR9 RNU6-1041P-201ENST00000516254 102 ntBASIC2.61□□□□□ -1.99
CLRN3Q8NCR9 RNU6-1337P-201ENST00000516525 95 ntBASIC2.61□□□□□ -1.99
CLRN3Q8NCR9 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.61□□□□□ -1.99
CLRN3Q8NCR9 MIR4286-201ENST00000580651 93 ntBASIC2.61□□□□□ -1.99
CLRN3Q8NCR9 MIR3668-201ENST00000582138 75 ntBASIC2.61□□□□□ -1.99
CLRN3Q8NCR9 MIR3670-2-201ENST00000582974 65 ntBASIC2.61□□□□□ -1.99
CLRN3Q8NCR9 MIR3670-1-201ENST00000584160 65 ntBASIC2.61□□□□□ -1.99
CLRN3Q8NCR9 MIR3670-3-201ENST00000584855 65 ntBASIC2.61□□□□□ -1.99
CLRN3Q8NCR9 MIR3670-4-201ENST00000612260 65 ntBASIC2.61□□□□□ -1.99
CLRN3Q8NCR9 AC022202.1-201ENST00000613515 211 ntBASIC2.61□□□□□ -1.99
CLRN3Q8NCR9 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC2.61□□□□□ -1.99
CLRN3Q8NCR9 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
CLRN3Q8NCR9 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 Y_RNA.287-201ENST00000364853 94 ntBASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 OOSP1P1-201ENST00000423265 274 ntBASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 RPL36AP21-201ENST00000490372 323 ntBASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 AC097462.1-201ENST00000514125 324 ntBASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 AC007224.1-201ENST00000564410 144 ntBASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 MIR3169-201ENST00000578032 83 ntBASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 MIR4282-201ENST00000583613 67 ntBASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 AC007229.1-201ENST00000590455 412 ntBASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 AC009779.6-201ENST00000603972 165 ntBASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 AC073349.3-201ENST00000617616 186 ntBASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 U6.73-201ENST00000619194 103 ntBASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 AL161431.1-201ENST00000618966 4205 ntBASIC2.6□□□□□ -1.99
CLRN3Q8NCR9 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 SPRR2C-201ENST00000290702 219 ntBASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 Y_RNA.117-201ENST00000363294 101 ntBASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 Y_RNA.122-201ENST00000363331 96 ntBASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 RNU1-22P-201ENST00000363334 158 ntBASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 Y_RNA.269-201ENST00000364685 89 ntBASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 Y_RNA.310-201ENST00000365063 113 ntBASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 RNU6-417P-201ENST00000384712 107 ntBASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 RPL21P65-201ENST00000406094 466 ntBASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 SNORA3.3-201ENST00000408712 125 ntBASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 SNORA11.4-201ENST00000408823 129 ntBASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 RNA5SP270-201ENST00000411361 118 ntBASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 BTF3P11-201ENST00000426582 477 ntBASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 SNORD2.1-201ENST00000458762 69 ntBASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 Y_RNA.638-201ENST00000459374 113 ntBASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 RPS29P21-201ENST00000496272 170 ntBASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 CYCSP30-201ENST00000546447 172 ntBASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 YPEL5P2-201ENST00000605553 359 ntBASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 MIR6867-201ENST00000610636 67 ntBASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 AL442067.1-201ENST00000613261 223 ntBASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 MIR338-201ENST00000636369 67 ntBASIC2.59□□□□□ -1.99
CLRN3Q8NCR9 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
CLRN3Q8NCR9 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
CLRN3Q8NCR9 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
CLRN3Q8NCR9 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC2.58□□□□□ -2
CLRN3Q8NCR9 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
CLRN3Q8NCR9 SNORA72.4-201ENST00000384174 132 ntBASIC2.58□□□□□ -2
CLRN3Q8NCR9 RNA5SP465-201ENST00000391195 109 ntBASIC2.58□□□□□ -2
CLRN3Q8NCR9 CST2P1-201ENST00000425770 87 ntBASIC2.58□□□□□ -2
CLRN3Q8NCR9 RPS15AP28-201ENST00000435088 386 ntBASIC2.58□□□□□ -2
CLRN3Q8NCR9 AC018634.1-201ENST00000437554 401 ntBASIC2.58□□□□□ -2
CLRN3Q8NCR9 RPS20P10-201ENST00000451209 253 ntBASIC2.58□□□□□ -2
CLRN3Q8NCR9 COX6CP14-201ENST00000469580 174 ntBASIC2.58□□□□□ -2
CLRN3Q8NCR9 AL049873.1-201ENST00000480540 376 ntBASIC2.58□□□□□ -2
CLRN3Q8NCR9 YWHAEP4-201ENST00000505390 198 ntBASIC2.58□□□□□ -2
CLRN3Q8NCR9 SNORA31.15-201ENST00000516771 132 ntBASIC2.58□□□□□ -2
CLRN3Q8NCR9 RNU7-172P-201ENST00000517125 64 ntBASIC2.58□□□□□ -2
CLRN3Q8NCR9 MIR4643-201ENST00000577473 78 ntBASIC2.58□□□□□ -2
CLRN3Q8NCR9 MIR4697-201ENST00000582977 78 ntBASIC2.58□□□□□ -2
CLRN3Q8NCR9 AC005786.1-201ENST00000588553 154 ntBASIC2.58□□□□□ -2
CLRN3Q8NCR9 AL359075.3-201ENST00000613288 217 ntBASIC2.58□□□□□ -2
CLRN3Q8NCR9 ZYXP1-201ENST00000617638 118 ntBASIC2.58□□□□□ -2
CLRN3Q8NCR9 MIR6500-201ENST00000622700 86 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 171 ms