Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 AC097473.1-201ENST00000508142 408 ntBASIC1.84□□□□□ -2.11
LHX1P48742 RNU6-237P-201ENST00000515985 71 ntBASIC1.84□□□□□ -2.11
LHX1P48742 RNU6-277P-201ENST00000516272 106 ntBASIC1.84□□□□□ -2.11
LHX1P48742 Y_RNA.702-201ENST00000516843 96 ntBASIC1.84□□□□□ -2.11
LHX1P48742 RNA5SP364-201ENST00000516938 78 ntBASIC1.84□□□□□ -2.11
LHX1P48742 RNU6-856P-201ENST00000516959 98 ntBASIC1.84□□□□□ -2.11
LHX1P48742 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.84□□□□□ -2.11
LHX1P48742 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.84□□□□□ -2.11
LHX1P48742 MIR502-201ENST00000606349 86 ntBASIC1.84□□□□□ -2.11
LHX1P48742 AL132765.2-201ENST00000610812 351 ntBASIC1.84□□□□□ -2.11
LHX1P48742 AC005296.1-201ENST00000616145 209 ntBASIC1.84□□□□□ -2.11
LHX1P48742 AL353997.5-201ENST00000618886 171 ntBASIC1.84□□□□□ -2.11
LHX1P48742 AC091932.3-201ENST00000624223 323 ntBASIC1.84□□□□□ -2.11
LHX1P48742 AC068205.3-201ENST00000636385 468 ntBASIC1.84□□□□□ -2.11
LHX1P48742 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.84□□□□□ -2.12
LHX1P48742 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
LHX1P48742 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.83□□□□□ -2.12
LHX1P48742 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
LHX1P48742 Y_RNA.179-201ENST00000363844 90 ntBASIC1.83□□□□□ -2.12
LHX1P48742 Y_RNA.364-201ENST00000365532 101 ntBASIC1.83□□□□□ -2.12
LHX1P48742 RNA5SP504-201ENST00000410676 117 ntBASIC1.83□□□□□ -2.12
LHX1P48742 HMGN2P19-201ENST00000425149 265 ntBASIC1.83□□□□□ -2.12
LHX1P48742 RPL23AP6-201ENST00000446637 472 ntBASIC1.83□□□□□ -2.12
LHX1P48742 ATP5J2P3-201ENST00000451550 258 ntBASIC1.83□□□□□ -2.12
LHX1P48742 Y_RNA.653-201ENST00000459091 95 ntBASIC1.83□□□□□ -2.12
LHX1P48742 RNA5SP57-201ENST00000459463 123 ntBASIC1.83□□□□□ -2.12
LHX1P48742 RNU7-57P-201ENST00000459540 60 ntBASIC1.83□□□□□ -2.12
LHX1P48742 AC091179.3-201ENST00000474761 144 ntBASIC1.83□□□□□ -2.12
LHX1P48742 RNU6-264P-201ENST00000517134 104 ntBASIC1.83□□□□□ -2.12
LHX1P48742 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.83□□□□□ -2.12
LHX1P48742 FRG2DP-202ENST00000566967 323 ntBASIC1.83□□□□□ -2.12
LHX1P48742 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.83□□□□□ -2.12
LHX1P48742 MIR4299-201ENST00000577899 72 ntBASIC1.83□□□□□ -2.12
LHX1P48742 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.83□□□□□ -2.12
LHX1P48742 MIR4769-201ENST00000584126 77 ntBASIC1.83□□□□□ -2.12
LHX1P48742 AC005034.5-201ENST00000604219 466 ntBASIC1.83□□□□□ -2.12
LHX1P48742 MIR8081-201ENST00000611533 95 ntBASIC1.83□□□□□ -2.12
LHX1P48742 AC010999.1-201ENST00000611856 324 ntBASIC1.83□□□□□ -2.12
LHX1P48742 AL773524.1-201ENST00000614065 229 ntBASIC1.83□□□□□ -2.12
LHX1P48742 AC133104.2-201ENST00000615272 193 ntBASIC1.83□□□□□ -2.12
LHX1P48742 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.83□□□□□ -2.12
LHX1P48742 ZNF72P-201ENST00000425869 1908 ntBASIC1.82□□□□□ -2.12
LHX1P48742 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
LHX1P48742 Y_RNA.415-201ENST00000384012 112 ntBASIC1.82□□□□□ -2.12
LHX1P48742 SNORA8-201ENST00000384574 139 ntBASIC1.82□□□□□ -2.12
LHX1P48742 SNORA75.6-201ENST00000391318 127 ntBASIC1.82□□□□□ -2.12
LHX1P48742 AC244636.1-201ENST00000421152 228 ntBASIC1.82□□□□□ -2.12
LHX1P48742 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.82□□□□□ -2.12
LHX1P48742 RPL30P15-201ENST00000457129 321 ntBASIC1.82□□□□□ -2.12
LHX1P48742 RNA5SP233-201ENST00000459153 113 ntBASIC1.82□□□□□ -2.12
LHX1P48742 RN7SL274P-201ENST00000492268 272 ntBASIC1.82□□□□□ -2.12
LHX1P48742 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.82□□□□□ -2.12
LHX1P48742 RNU6-507P-201ENST00000516045 100 ntBASIC1.82□□□□□ -2.12
LHX1P48742 RNVU1-2-201ENST00000516326 135 ntBASIC1.82□□□□□ -2.12
LHX1P48742 AC093023.1-201ENST00000547375 507 ntBASIC1.82□□□□□ -2.12
LHX1P48742 AC090617.3-201ENST00000573670 475 ntBASIC1.82□□□□□ -2.12
LHX1P48742 AC008749.1-201ENST00000597650 306 ntBASIC1.82□□□□□ -2.12
LHX1P48742 AC012493.3-201ENST00000604494 112 ntBASIC1.82□□□□□ -2.12
LHX1P48742 AC104260.1-201ENST00000616660 539 ntBASIC1.82□□□□□ -2.12
LHX1P48742 AC022513.1-201ENST00000624512 117 ntBASIC1.82□□□□□ -2.12
LHX1P48742 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.82□□□□□ -2.12
LHX1P48742 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
LHX1P48742 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
LHX1P48742 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
LHX1P48742 RNU6-874P-201ENST00000362390 105 ntBASIC1.81□□□□□ -2.12
LHX1P48742 RNU1-17P-201ENST00000363022 152 ntBASIC1.81□□□□□ -2.12
LHX1P48742 Y_RNA.259-201ENST00000364619 101 ntBASIC1.81□□□□□ -2.12
LHX1P48742 RNU6-99P-201ENST00000364721 107 ntBASIC1.81□□□□□ -2.12
LHX1P48742 SNORD87-201ENST00000364849 89 ntBASIC1.81□□□□□ -2.12
LHX1P48742 RNA5SP190-201ENST00000365222 118 ntBASIC1.81□□□□□ -2.12
LHX1P48742 RNA5SP212-201ENST00000391223 107 ntBASIC1.81□□□□□ -2.12
LHX1P48742 MTCYBP4-201ENST00000401524 249 ntBASIC1.81□□□□□ -2.12
LHX1P48742 RNU6-57P-201ENST00000411348 103 ntBASIC1.81□□□□□ -2.12
LHX1P48742 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.81□□□□□ -2.12
LHX1P48742 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.81□□□□□ -2.12
LHX1P48742 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.81□□□□□ -2.12
LHX1P48742 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.81□□□□□ -2.12
LHX1P48742 AL109918.3-201ENST00000603072 338 ntBASIC1.81□□□□□ -2.12
LHX1P48742 MZT1P2-201ENST00000604387 248 ntBASIC1.81□□□□□ -2.12
LHX1P48742 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.81□□□□□ -2.12
LHX1P48742 MIR1244-1-201ENST00000612829 85 ntBASIC1.81□□□□□ -2.12
LHX1P48742 MIR1244-3-201ENST00000635744 85 ntBASIC1.81□□□□□ -2.12
LHX1P48742 MIR1244-2-201ENST00000636449 85 ntBASIC1.81□□□□□ -2.12
LHX1P48742 MIR1244-4-202ENST00000636813 85 ntBASIC1.81□□□□□ -2.12
LHX1P48742 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.81□□□□□ -2.12
LHX1P48742 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
LHX1P48742 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
LHX1P48742 Y_RNA.263-201ENST00000364659 114 ntBASIC1.8□□□□□ -2.12
LHX1P48742 Y_RNA.356-201ENST00000365475 113 ntBASIC1.8□□□□□ -2.12
LHX1P48742 RNU6-890P-201ENST00000384121 107 ntBASIC1.8□□□□□ -2.12
LHX1P48742 RNU6-281P-201ENST00000384212 103 ntBASIC1.8□□□□□ -2.12
LHX1P48742 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
LHX1P48742 AC060773.1-201ENST00000421698 310 ntBASIC1.8□□□□□ -2.12
LHX1P48742 EIF1P2-201ENST00000428233 350 ntBASIC1.8□□□□□ -2.12
LHX1P48742 UBE2V1P7-201ENST00000446395 340 ntBASIC1.8□□□□□ -2.12
LHX1P48742 MTCO3P10-201ENST00000455912 772 ntBASIC1.8□□□□□ -2.12
LHX1P48742 AC022493.2-201ENST00000506122 481 ntBASIC1.8□□□□□ -2.12
LHX1P48742 AC011406.1-201ENST00000512440 370 ntBASIC1.8□□□□□ -2.12
LHX1P48742 RNU6-1041P-201ENST00000516254 102 ntBASIC1.8□□□□□ -2.12
LHX1P48742 Y_RNA.683-201ENST00000516508 93 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 124.4 ms