Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cpsf3Q9QXK7 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Cpsf3Q9QXK7 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC17.28■□□□□ 0.36
Cpsf3Q9QXK7 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cpsf3Q9QXK7 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC17.28■□□□□ 0.36
Cpsf3Q9QXK7 Gm25745-201ENSMUST00000174945 133 ntBASIC17.28■□□□□ 0.36
Cpsf3Q9QXK7 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Cpsf3Q9QXK7 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cpsf3Q9QXK7 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC17.28■□□□□ 0.36
Cpsf3Q9QXK7 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Cpsf3Q9QXK7 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Cpsf3Q9QXK7 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Cpsf3Q9QXK7 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Cpsf3Q9QXK7 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Cpsf3Q9QXK7 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cpsf3Q9QXK7 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cpsf3Q9QXK7 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cpsf3Q9QXK7 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cpsf3Q9QXK7 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cpsf3Q9QXK7 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cpsf3Q9QXK7 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC17.28■□□□□ 0.36
Cpsf3Q9QXK7 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cpsf3Q9QXK7 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 Gm25406-201ENSMUST00000157599 105 ntBASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 Gm43347-201ENSMUST00000200226 580 ntBASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
Cpsf3Q9QXK7 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Cpsf3Q9QXK7 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC17.27■□□□□ 0.35
Cpsf3Q9QXK7 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
Cpsf3Q9QXK7 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Cpsf3Q9QXK7 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Cpsf3Q9QXK7 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Cpsf3Q9QXK7 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
Cpsf3Q9QXK7 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cpsf3Q9QXK7 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC17.26■□□□□ 0.35
Cpsf3Q9QXK7 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cpsf3Q9QXK7 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cpsf3Q9QXK7 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cpsf3Q9QXK7 Gm15743-202ENSMUST00000182690 1901 ntBASIC17.26■□□□□ 0.35
Cpsf3Q9QXK7 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cpsf3Q9QXK7 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cpsf3Q9QXK7 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cpsf3Q9QXK7 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC17.26■□□□□ 0.35
Cpsf3Q9QXK7 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC17.26■□□□□ 0.35
Cpsf3Q9QXK7 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC17.26■□□□□ 0.35
Cpsf3Q9QXK7 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cpsf3Q9QXK7 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
Cpsf3Q9QXK7 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cpsf3Q9QXK7 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cpsf3Q9QXK7 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cpsf3Q9QXK7 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Cpsf3Q9QXK7 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cpsf3Q9QXK7 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Cpsf3Q9QXK7 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cpsf3Q9QXK7 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cpsf3Q9QXK7 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Cpsf3Q9QXK7 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cpsf3Q9QXK7 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cpsf3Q9QXK7 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
Cpsf3Q9QXK7 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC17.25■□□□□ 0.35
Cpsf3Q9QXK7 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC17.25■□□□□ 0.35
Cpsf3Q9QXK7 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Cpsf3Q9QXK7 AC160338.1-201ENSMUST00000214232 705 ntBASIC17.25■□□□□ 0.35
Cpsf3Q9QXK7 Vti1a-206ENSMUST00000225529 1244 ntBASIC17.25■□□□□ 0.35
Cpsf3Q9QXK7 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cpsf3Q9QXK7 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC17.25■□□□□ 0.35
Cpsf3Q9QXK7 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cpsf3Q9QXK7 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Cpsf3Q9QXK7 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cpsf3Q9QXK7 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cpsf3Q9QXK7 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cpsf3Q9QXK7 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC17.24■□□□□ 0.35
Cpsf3Q9QXK7 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cpsf3Q9QXK7 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cpsf3Q9QXK7 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cpsf3Q9QXK7 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cpsf3Q9QXK7 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cpsf3Q9QXK7 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC17.24■□□□□ 0.35
Cpsf3Q9QXK7 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms