Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Clp1Q99LI9 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Clp1Q99LI9 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Clp1Q99LI9 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Clp1Q99LI9 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Clp1Q99LI9 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Clp1Q99LI9 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Clp1Q99LI9 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Gm11185-201ENSMUST00000117732 1007 ntBASIC16.92■□□□□ 0.3
Clp1Q99LI9 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC16.92■□□□□ 0.3
Clp1Q99LI9 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Clp1Q99LI9 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC16.91■□□□□ 0.3
Clp1Q99LI9 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Clp1Q99LI9 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Clp1Q99LI9 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Clp1Q99LI9 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Clp1Q99LI9 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
Clp1Q99LI9 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Clp1Q99LI9 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Clp1Q99LI9 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Clp1Q99LI9 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Clp1Q99LI9 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Clp1Q99LI9 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Clp1Q99LI9 Gm44872-201ENSMUST00000207864 420 ntBASIC16.91■□□□□ 0.3
Clp1Q99LI9 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Clp1Q99LI9 AC158982.1-201ENSMUST00000228377 901 ntBASIC16.91■□□□□ 0.3
Clp1Q99LI9 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Clp1Q99LI9 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Clp1Q99LI9 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Clp1Q99LI9 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Clp1Q99LI9 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Clp1Q99LI9 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clp1Q99LI9 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clp1Q99LI9 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clp1Q99LI9 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clp1Q99LI9 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clp1Q99LI9 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Clp1Q99LI9 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC16.9■□□□□ 0.3
Clp1Q99LI9 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clp1Q99LI9 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clp1Q99LI9 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clp1Q99LI9 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clp1Q99LI9 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC16.9■□□□□ 0.3
Clp1Q99LI9 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clp1Q99LI9 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clp1Q99LI9 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clp1Q99LI9 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Clp1Q99LI9 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Clp1Q99LI9 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Clp1Q99LI9 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC16.89■□□□□ 0.3
Clp1Q99LI9 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Clp1Q99LI9 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
Clp1Q99LI9 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Clp1Q99LI9 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Clp1Q99LI9 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Clp1Q99LI9 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC16.89■□□□□ 0.29
Clp1Q99LI9 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Clp1Q99LI9 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Clp1Q99LI9 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Clp1Q99LI9 Gm14057-201ENSMUST00000120631 482 ntBASIC16.89■□□□□ 0.29
Clp1Q99LI9 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Clp1Q99LI9 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Clp1Q99LI9 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC16.89■□□□□ 0.29
Clp1Q99LI9 Gm17968-201ENSMUST00000194902 784 ntBASIC16.89■□□□□ 0.29
Clp1Q99LI9 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC16.89■□□□□ 0.29
Clp1Q99LI9 Gm44492-201ENSMUST00000197012 141 ntBASIC16.89■□□□□ 0.29
Clp1Q99LI9 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Clp1Q99LI9 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Clp1Q99LI9 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC16.89■□□□□ 0.29
Clp1Q99LI9 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Clp1Q99LI9 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
Clp1Q99LI9 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Clp1Q99LI9 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Clp1Q99LI9 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Clp1Q99LI9 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Clp1Q99LI9 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Clp1Q99LI9 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Clp1Q99LI9 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC16.88■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms