Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Trim9Q8C7M3 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim9Q8C7M3 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim9Q8C7M3 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim9Q8C7M3 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC17.76■□□□□ 0.43
Trim9Q8C7M3 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim9Q8C7M3 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim9Q8C7M3 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trim9Q8C7M3 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim9Q8C7M3 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim9Q8C7M3 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim9Q8C7M3 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim9Q8C7M3 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim9Q8C7M3 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Trim9Q8C7M3 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Trim9Q8C7M3 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim9Q8C7M3 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
Trim9Q8C7M3 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim9Q8C7M3 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim9Q8C7M3 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim9Q8C7M3 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim9Q8C7M3 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim9Q8C7M3 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim9Q8C7M3 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim9Q8C7M3 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
Trim9Q8C7M3 Mir6404-201ENSMUST00000183699 94 ntBASIC17.75■□□□□ 0.43
Trim9Q8C7M3 AC154471.1-201ENSMUST00000224418 436 ntBASIC17.75■□□□□ 0.43
Trim9Q8C7M3 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim9Q8C7M3 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim9Q8C7M3 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC17.75■□□□□ 0.43
Trim9Q8C7M3 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim9Q8C7M3 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC17.75■□□□□ 0.43
Trim9Q8C7M3 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim9Q8C7M3 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim9Q8C7M3 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim9Q8C7M3 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Trim9Q8C7M3 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim9Q8C7M3 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim9Q8C7M3 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Trim9Q8C7M3 Olfr129-201ENSMUST00000122318 993 ntBASIC17.74■□□□□ 0.43
Trim9Q8C7M3 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC17.74■□□□□ 0.43
Trim9Q8C7M3 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trim9Q8C7M3 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trim9Q8C7M3 AC130713.1-201ENSMUST00000228853 1096 ntBASIC17.74■□□□□ 0.43
Trim9Q8C7M3 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim9Q8C7M3 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Trim9Q8C7M3 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim9Q8C7M3 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim9Q8C7M3 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim9Q8C7M3 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim9Q8C7M3 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim9Q8C7M3 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Trim9Q8C7M3 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim9Q8C7M3 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Trim9Q8C7M3 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC17.74■□□□□ 0.43
Trim9Q8C7M3 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trim9Q8C7M3 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim9Q8C7M3 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim9Q8C7M3 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC17.73■□□□□ 0.43
Trim9Q8C7M3 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim9Q8C7M3 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim9Q8C7M3 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim9Q8C7M3 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Trim9Q8C7M3 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC17.73■□□□□ 0.43
Trim9Q8C7M3 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim9Q8C7M3 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim9Q8C7M3 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim9Q8C7M3 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim9Q8C7M3 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Trim9Q8C7M3 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim9Q8C7M3 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim9Q8C7M3 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim9Q8C7M3 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim9Q8C7M3 Gm38327-201ENSMUST00000195852 1755 ntBASIC17.73■□□□□ 0.43
Trim9Q8C7M3 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim9Q8C7M3 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC17.73■□□□□ 0.43
Trim9Q8C7M3 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim9Q8C7M3 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Gm13312-201ENSMUST00000119631 718 ntBASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Gm27742-201ENSMUST00000184667 60 ntBASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim9Q8C7M3 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms