Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Trim56Q80VI1 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trim56Q80VI1 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trim56Q80VI1 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC18.97■□□□□ 0.63
Trim56Q80VI1 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trim56Q80VI1 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Trim56Q80VI1 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trim56Q80VI1 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
Trim56Q80VI1 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trim56Q80VI1 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trim56Q80VI1 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Trim56Q80VI1 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trim56Q80VI1 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trim56Q80VI1 Rbfox2-206ENSMUST00000227314 1810 ntBASIC18.96■□□□□ 0.63
Trim56Q80VI1 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trim56Q80VI1 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trim56Q80VI1 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC18.96■□□□□ 0.63
Trim56Q80VI1 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Trim56Q80VI1 Gm44357-201ENSMUST00000195897 142 ntBASIC18.96■□□□□ 0.63
Trim56Q80VI1 Gm19658-201ENSMUST00000196231 138 ntBASIC18.96■□□□□ 0.63
Trim56Q80VI1 Gm44367-201ENSMUST00000196836 138 ntBASIC18.96■□□□□ 0.63
Trim56Q80VI1 Gm44350-201ENSMUST00000197197 138 ntBASIC18.96■□□□□ 0.63
Trim56Q80VI1 Gm44390-201ENSMUST00000197533 144 ntBASIC18.96■□□□□ 0.63
Trim56Q80VI1 Gm44313-201ENSMUST00000198018 138 ntBASIC18.96■□□□□ 0.63
Trim56Q80VI1 Gm44486-201ENSMUST00000198508 138 ntBASIC18.96■□□□□ 0.63
Trim56Q80VI1 Gm44314-201ENSMUST00000199263 138 ntBASIC18.96■□□□□ 0.63
Trim56Q80VI1 Gm44394-201ENSMUST00000199558 138 ntBASIC18.96■□□□□ 0.63
Trim56Q80VI1 Gm44484-201ENSMUST00000199873 138 ntBASIC18.96■□□□□ 0.63
Trim56Q80VI1 Gm44466-201ENSMUST00000200264 138 ntBASIC18.96■□□□□ 0.63
Trim56Q80VI1 Gm44359-201ENSMUST00000200671 138 ntBASIC18.96■□□□□ 0.63
Trim56Q80VI1 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trim56Q80VI1 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC18.96■□□□□ 0.63
Trim56Q80VI1 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trim56Q80VI1 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trim56Q80VI1 Ddx41-204ENSMUST00000224765 2199 ntBASIC18.96■□□□□ 0.63
Trim56Q80VI1 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trim56Q80VI1 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trim56Q80VI1 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trim56Q80VI1 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim56Q80VI1 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim56Q80VI1 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim56Q80VI1 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim56Q80VI1 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim56Q80VI1 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Trim56Q80VI1 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim56Q80VI1 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim56Q80VI1 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim56Q80VI1 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim56Q80VI1 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trim56Q80VI1 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim56Q80VI1 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim56Q80VI1 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC18.94■□□□□ 0.62
Trim56Q80VI1 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Trim56Q80VI1 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Trim56Q80VI1 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim56Q80VI1 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim56Q80VI1 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC18.94■□□□□ 0.62
Trim56Q80VI1 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim56Q80VI1 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim56Q80VI1 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim56Q80VI1 AC159301.1-201ENSMUST00000225130 1182 ntBASIC18.94■□□□□ 0.62
Trim56Q80VI1 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim56Q80VI1 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim56Q80VI1 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Trim56Q80VI1 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim56Q80VI1 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
Trim56Q80VI1 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Trim56Q80VI1 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC18.94■□□□□ 0.62
Trim56Q80VI1 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trim56Q80VI1 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trim56Q80VI1 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim56Q80VI1 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim56Q80VI1 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim56Q80VI1 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
Trim56Q80VI1 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trim56Q80VI1 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC18.93■□□□□ 0.62
Trim56Q80VI1 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC18.93■□□□□ 0.62
Trim56Q80VI1 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC18.93■□□□□ 0.62
Trim56Q80VI1 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Trim56Q80VI1 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trim56Q80VI1 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trim56Q80VI1 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim56Q80VI1 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim56Q80VI1 Gm45412-201ENSMUST00000210217 2275 ntBASIC18.93■□□□□ 0.62
Trim56Q80VI1 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim56Q80VI1 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim56Q80VI1 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim56Q80VI1 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim56Q80VI1 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim56Q80VI1 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
Trim56Q80VI1 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim56Q80VI1 Gm4459-201ENSMUST00000118750 468 ntBASIC18.92■□□□□ 0.62
Trim56Q80VI1 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim56Q80VI1 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Trim56Q80VI1 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trim56Q80VI1 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim56Q80VI1 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim56Q80VI1 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim56Q80VI1 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Trim56Q80VI1 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 41.6 ms