Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col7a1Q63870 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col7a1Q63870 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col7a1Q63870 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col7a1Q63870 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col7a1Q63870 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Col7a1Q63870 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col7a1Q63870 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
Col7a1Q63870 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC13.25□□□□□ -0.29
Col7a1Q63870 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col7a1Q63870 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col7a1Q63870 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col7a1Q63870 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC13.25□□□□□ -0.29
Col7a1Q63870 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col7a1Q63870 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col7a1Q63870 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col7a1Q63870 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col7a1Q63870 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col7a1Q63870 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col7a1Q63870 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
Col7a1Q63870 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Col7a1Q63870 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC13.24□□□□□ -0.29
Col7a1Q63870 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC13.24□□□□□ -0.29
Col7a1Q63870 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Col7a1Q63870 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC13.24□□□□□ -0.29
Col7a1Q63870 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Col7a1Q63870 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Col7a1Q63870 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col7a1Q63870 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col7a1Q63870 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col7a1Q63870 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col7a1Q63870 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col7a1Q63870 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC13.24□□□□□ -0.29
Col7a1Q63870 Gm12017-201ENSMUST00000122453 1003 ntBASIC13.24□□□□□ -0.29
Col7a1Q63870 AC124732.1-201ENSMUST00000221551 910 ntBASIC13.24□□□□□ -0.29
Col7a1Q63870 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col7a1Q63870 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col7a1Q63870 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col7a1Q63870 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col7a1Q63870 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col7a1Q63870 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col7a1Q63870 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
Col7a1Q63870 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col7a1Q63870 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col7a1Q63870 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col7a1Q63870 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC13.23□□□□□ -0.29
Col7a1Q63870 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC13.23□□□□□ -0.29
Col7a1Q63870 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC13.23□□□□□ -0.29
Col7a1Q63870 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col7a1Q63870 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col7a1Q63870 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col7a1Q63870 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col7a1Q63870 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col7a1Q63870 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC13.23□□□□□ -0.29
Col7a1Q63870 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col7a1Q63870 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col7a1Q63870 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col7a1Q63870 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col7a1Q63870 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col7a1Q63870 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col7a1Q63870 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col7a1Q63870 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col7a1Q63870 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col7a1Q63870 Gm12859-201ENSMUST00000117834 427 ntBASIC13.23□□□□□ -0.29
Col7a1Q63870 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC13.23□□□□□ -0.29
Col7a1Q63870 Gm18766-201ENSMUST00000189811 808 ntBASIC13.23□□□□□ -0.29
Col7a1Q63870 Gm7619-201ENSMUST00000210649 1282 ntBASIC13.23□□□□□ -0.29
Col7a1Q63870 AC166349.1-201ENSMUST00000220866 695 ntBASIC13.23□□□□□ -0.29
Col7a1Q63870 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col7a1Q63870 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Col7a1Q63870 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col7a1Q63870 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col7a1Q63870 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Col7a1Q63870 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Col7a1Q63870 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Col7a1Q63870 Gm8515-201ENSMUST00000194852 576 ntBASIC13.22□□□□□ -0.29
Col7a1Q63870 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Col7a1Q63870 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col7a1Q63870 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col7a1Q63870 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col7a1Q63870 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Col7a1Q63870 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col7a1Q63870 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col7a1Q63870 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col7a1Q63870 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col7a1Q63870 Gm13015-201ENSMUST00000118674 204 ntBASIC13.22□□□□□ -0.29
Col7a1Q63870 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Col7a1Q63870 Gm36967-201ENSMUST00000193814 266 ntBASIC13.22□□□□□ -0.29
Col7a1Q63870 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col7a1Q63870 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Col7a1Q63870 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col7a1Q63870 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC13.22□□□□□ -0.29
Col7a1Q63870 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Col7a1Q63870 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Col7a1Q63870 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Col7a1Q63870 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC13.21□□□□□ -0.29
Col7a1Q63870 Gm6888-201ENSMUST00000221983 706 ntBASIC13.21□□□□□ -0.29
Col7a1Q63870 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Col7a1Q63870 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col7a1Q63870 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms