Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC19.3■□□□□ 0.68
Vps54Q5SPW0 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Vps54Q5SPW0 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vps54Q5SPW0 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC19.3■□□□□ 0.68
Vps54Q5SPW0 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vps54Q5SPW0 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Vps54Q5SPW0 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vps54Q5SPW0 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vps54Q5SPW0 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Vps54Q5SPW0 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Gm44357-201ENSMUST00000195897 142 ntBASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Gm19658-201ENSMUST00000196231 138 ntBASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Gm44367-201ENSMUST00000196836 138 ntBASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Gm44350-201ENSMUST00000197197 138 ntBASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Gm44390-201ENSMUST00000197533 144 ntBASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Gm44313-201ENSMUST00000198018 138 ntBASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Gm44486-201ENSMUST00000198508 138 ntBASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Gm44314-201ENSMUST00000199263 138 ntBASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Gm44394-201ENSMUST00000199558 138 ntBASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Gm44484-201ENSMUST00000199873 138 ntBASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Gm44466-201ENSMUST00000200264 138 ntBASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Gm44359-201ENSMUST00000200671 138 ntBASIC19.29■□□□□ 0.68
Vps54Q5SPW0 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC19.29■□□□□ 0.68
Vps54Q5SPW0 AC159301.1-201ENSMUST00000225130 1182 ntBASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Gm7461-201ENSMUST00000058918 827 ntBASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC19.29■□□□□ 0.68
Vps54Q5SPW0 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC19.29■□□□□ 0.68
Vps54Q5SPW0 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC19.28■□□□□ 0.68
Vps54Q5SPW0 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps54Q5SPW0 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps54Q5SPW0 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps54Q5SPW0 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps54Q5SPW0 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps54Q5SPW0 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps54Q5SPW0 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps54Q5SPW0 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps54Q5SPW0 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps54Q5SPW0 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps54Q5SPW0 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps54Q5SPW0 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC19.28■□□□□ 0.68
Vps54Q5SPW0 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps54Q5SPW0 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Vps54Q5SPW0 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Vps54Q5SPW0 Gm37166-201ENSMUST00000195473 2474 ntBASIC19.28■□□□□ 0.68
Vps54Q5SPW0 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Vps54Q5SPW0 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Vps54Q5SPW0 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps54Q5SPW0 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps54Q5SPW0 Gm28265-201ENSMUST00000188201 2319 ntBASIC19.28■□□□□ 0.68
Vps54Q5SPW0 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Vps54Q5SPW0 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vps54Q5SPW0 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
Vps54Q5SPW0 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vps54Q5SPW0 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vps54Q5SPW0 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC19.27■□□□□ 0.68
Vps54Q5SPW0 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vps54Q5SPW0 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Vps54Q5SPW0 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vps54Q5SPW0 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vps54Q5SPW0 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vps54Q5SPW0 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Vps54Q5SPW0 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vps54Q5SPW0 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vps54Q5SPW0 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Vps54Q5SPW0 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Vps54Q5SPW0 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.67
Vps54Q5SPW0 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Vps54Q5SPW0 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC19.27■□□□□ 0.67
Vps54Q5SPW0 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Vps54Q5SPW0 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC19.26■□□□□ 0.67
Vps54Q5SPW0 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps54Q5SPW0 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps54Q5SPW0 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Vps54Q5SPW0 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps54Q5SPW0 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps54Q5SPW0 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps54Q5SPW0 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps54Q5SPW0 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC19.26■□□□□ 0.67
Vps54Q5SPW0 Gm5864-201ENSMUST00000202263 970 ntBASIC19.26■□□□□ 0.67
Vps54Q5SPW0 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps54Q5SPW0 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps54Q5SPW0 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Vps54Q5SPW0 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC19.26■□□□□ 0.67
Vps54Q5SPW0 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Vps54Q5SPW0 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Vps54Q5SPW0 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
Vps54Q5SPW0 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Vps54Q5SPW0 Ddx41-204ENSMUST00000224765 2199 ntBASIC19.26■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 42.3 ms