Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rfx1P48377 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Rfx1P48377 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC19.27■□□□□ 0.68
Rfx1P48377 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rfx1P48377 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
Rfx1P48377 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Rfx1P48377 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rfx1P48377 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rfx1P48377 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Rfx1P48377 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rfx1P48377 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rfx1P48377 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC19.27■□□□□ 0.68
Rfx1P48377 Gm14464-201ENSMUST00000119658 1254 ntBASIC19.27■□□□□ 0.68
Rfx1P48377 Gm4217-201ENSMUST00000182243 1002 ntBASIC19.27■□□□□ 0.68
Rfx1P48377 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rfx1P48377 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC19.27■□□□□ 0.68
Rfx1P48377 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Rfx1P48377 AC156016.1-201ENSMUST00000227190 1035 ntBASIC19.27■□□□□ 0.68
Rfx1P48377 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC19.27■□□□□ 0.68
Rfx1P48377 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rfx1P48377 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rfx1P48377 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC19.27■□□□□ 0.68
Rfx1P48377 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Rfx1P48377 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.67
Rfx1P48377 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Rfx1P48377 Sybu-209ENSMUST00000228639 4113 ntBASIC19.27■□□□□ 0.67
Rfx1P48377 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Rfx1P48377 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rfx1P48377 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Rfx1P48377 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Rfx1P48377 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Rfx1P48377 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rfx1P48377 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC19.26■□□□□ 0.67
Rfx1P48377 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rfx1P48377 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rfx1P48377 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rfx1P48377 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rfx1P48377 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rfx1P48377 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rfx1P48377 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rfx1P48377 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC19.26■□□□□ 0.67
Rfx1P48377 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Rfx1P48377 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Rfx1P48377 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
Rfx1P48377 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rfx1P48377 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Rfx1P48377 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Rfx1P48377 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Rfx1P48377 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC19.26■□□□□ 0.67
Rfx1P48377 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rfx1P48377 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Rfx1P48377 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Rfx1P48377 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rfx1P48377 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Rfx1P48377 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Rfx1P48377 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Rfx1P48377 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Rfx1P48377 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Rfx1P48377 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rfx1P48377 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC19.25■□□□□ 0.67
Rfx1P48377 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rfx1P48377 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rfx1P48377 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rfx1P48377 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC19.25■□□□□ 0.67
Rfx1P48377 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rfx1P48377 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Rfx1P48377 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
Rfx1P48377 Gm10653-202ENSMUST00000139570 835 ntBASIC19.25■□□□□ 0.67
Rfx1P48377 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC19.25■□□□□ 0.67
Rfx1P48377 AC153881.1-201ENSMUST00000214448 284 ntBASIC19.25■□□□□ 0.67
Rfx1P48377 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC19.25■□□□□ 0.67
Rfx1P48377 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rfx1P48377 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rfx1P48377 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Rfx1P48377 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rfx1P48377 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Rfx1P48377 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Rfx1P48377 Gm44729-201ENSMUST00000206759 2052 ntBASIC19.24■□□□□ 0.67
Rfx1P48377 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rfx1P48377 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rfx1P48377 Zfp264-201ENSMUST00000208656 1563 ntBASIC19.24■□□□□ 0.67
Rfx1P48377 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Rfx1P48377 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Rfx1P48377 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC19.24■□□□□ 0.67
Rfx1P48377 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rfx1P48377 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rfx1P48377 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rfx1P48377 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rfx1P48377 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rfx1P48377 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rfx1P48377 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rfx1P48377 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rfx1P48377 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Rfx1P48377 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rfx1P48377 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Rfx1P48377 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rfx1P48377 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rfx1P48377 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rfx1P48377 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
Rfx1P48377 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC19.23■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms