Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC21.33■■□□□ 1
Col18a1P39061 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC21.33■■□□□ 1
Col18a1P39061 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC21.33■■□□□ 1
Col18a1P39061 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC21.33■■□□□ 1
Col18a1P39061 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC21.33■■□□□ 1
Col18a1P39061 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Col18a1P39061 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col18a1P39061 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC21.32■■□□□ 1
Col18a1P39061 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col18a1P39061 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC21.32■■□□□ 1
Col18a1P39061 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col18a1P39061 Gm12017-201ENSMUST00000122453 1003 ntBASIC21.32■■□□□ 1
Col18a1P39061 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC21.32■■□□□ 1
Col18a1P39061 Gm17837-201ENSMUST00000186435 985 ntBASIC21.32■■□□□ 1
Col18a1P39061 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC21.32■■□□□ 1
Col18a1P39061 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC21.32■■□□□ 1
Col18a1P39061 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col18a1P39061 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Col18a1P39061 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC21.31■■□□□ 1
Col18a1P39061 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Col18a1P39061 Gm37194-201ENSMUST00000193092 3031 ntBASIC21.31■■□□□ 1
Col18a1P39061 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Col18a1P39061 Gm6973-201ENSMUST00000117080 721 ntBASIC21.31■■□□□ 1
Col18a1P39061 Gm2810-201ENSMUST00000118681 990 ntBASIC21.31■■□□□ 1
Col18a1P39061 Gm13453-201ENSMUST00000118708 357 ntBASIC21.31■■□□□ 1
Col18a1P39061 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC21.31■■□□□ 1
Col18a1P39061 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC21.31■■□□□ 1
Col18a1P39061 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Col18a1P39061 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC21.31■■□□□ 1
Col18a1P39061 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC21.31■■□□□ 1
Col18a1P39061 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col18a1P39061 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col18a1P39061 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC21.31■■□□□ 1
Col18a1P39061 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC21.31■■□□□ 1
Col18a1P39061 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC21.31■■□□□ 1
Col18a1P39061 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col18a1P39061 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col18a1P39061 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col18a1P39061 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col18a1P39061 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC21.31■■□□□ 1
Col18a1P39061 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Col18a1P39061 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC21.31■■□□□ 1
Col18a1P39061 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
Col18a1P39061 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC21.3■■□□□ 1
Col18a1P39061 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Col18a1P39061 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Col18a1P39061 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
Col18a1P39061 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC21.3■■□□□ 1
Col18a1P39061 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col18a1P39061 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col18a1P39061 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Col18a1P39061 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col18a1P39061 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC21.3■■□□□ 1
Col18a1P39061 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col18a1P39061 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC21.3■■□□□ 1
Col18a1P39061 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col18a1P39061 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC21.3■■□□□ 1
Col18a1P39061 Gm10154-201ENSMUST00000084445 354 ntBASIC21.3■■□□□ 1
Col18a1P39061 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col18a1P39061 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC21.3■■□□□ 1
Col18a1P39061 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col18a1P39061 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Col18a1P39061 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC21.29■■□□□ 1
Col18a1P39061 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC21.29■■□□□ 1
Col18a1P39061 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC21.29■■□□□ 1
Col18a1P39061 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC21.29■■□□□ 1
Col18a1P39061 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col18a1P39061 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col18a1P39061 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col18a1P39061 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col18a1P39061 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col18a1P39061 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC21.29■■□□□ 1
Col18a1P39061 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
Col18a1P39061 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col18a1P39061 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Col18a1P39061 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Col18a1P39061 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC21.28■■□□□ 1
Col18a1P39061 Gm2272-201ENSMUST00000194903 582 ntBASIC21.28■■□□□ 1
Col18a1P39061 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC21.28■■□□□ 1
Col18a1P39061 AC132863.2-201ENSMUST00000226643 799 ntBASIC21.28■■□□□ 1
Col18a1P39061 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col18a1P39061 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC21.28■■□□□ 1
Col18a1P39061 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC21.28■■□□□ 1
Col18a1P39061 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Col18a1P39061 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Col18a1P39061 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC21.28■■□□□ 1
Col18a1P39061 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col18a1P39061 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col18a1P39061 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Col18a1P39061 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col18a1P39061 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Col18a1P39061 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Col18a1P39061 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col18a1P39061 AC025913.2-201ENSMUST00000220136 1766 ntBASIC21.27■■□□□ 1
Col18a1P39061 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col18a1P39061 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Col18a1P39061 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC21.27■■□□□ 1
Col18a1P39061 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC21.27■■□□□ 1
Col18a1P39061 Gm27680-201ENSMUST00000184192 160 ntBASIC21.27■■□□□ 1
Col18a1P39061 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms