Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Sdc1P18828 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Sdc1P18828 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Sdc1P18828 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sdc1P18828 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sdc1P18828 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC13.27□□□□□ -0.29
Sdc1P18828 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Sdc1P18828 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Sdc1P18828 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sdc1P18828 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sdc1P18828 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sdc1P18828 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sdc1P18828 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sdc1P18828 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sdc1P18828 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Sdc1P18828 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sdc1P18828 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sdc1P18828 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Sdc1P18828 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC13.27□□□□□ -0.29
Sdc1P18828 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sdc1P18828 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sdc1P18828 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sdc1P18828 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
Sdc1P18828 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sdc1P18828 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC13.26□□□□□ -0.29
Sdc1P18828 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sdc1P18828 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC13.26□□□□□ -0.29
Sdc1P18828 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Sdc1P18828 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Sdc1P18828 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sdc1P18828 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Sdc1P18828 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sdc1P18828 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sdc1P18828 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Sdc1P18828 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Sdc1P18828 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sdc1P18828 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Sdc1P18828 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC13.26□□□□□ -0.29
Sdc1P18828 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Sdc1P18828 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC13.26□□□□□ -0.29
Sdc1P18828 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sdc1P18828 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
Sdc1P18828 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC13.26□□□□□ -0.29
Sdc1P18828 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sdc1P18828 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Sdc1P18828 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Sdc1P18828 Gm11960-202ENSMUST00000181063 2858 ntBASIC13.26□□□□□ -0.29
Sdc1P18828 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sdc1P18828 BC037039-201ENSMUST00000192003 2205 ntBASIC13.25□□□□□ -0.29
Sdc1P18828 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Sdc1P18828 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sdc1P18828 Tfap2a-203ENSMUST00000223869 2037 ntBASIC13.25□□□□□ -0.29
Sdc1P18828 Gm45203-201ENSMUST00000206384 1831 ntBASIC13.25□□□□□ -0.29
Sdc1P18828 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sdc1P18828 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sdc1P18828 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sdc1P18828 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sdc1P18828 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sdc1P18828 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sdc1P18828 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sdc1P18828 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC13.25□□□□□ -0.29
Sdc1P18828 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sdc1P18828 Gm21956-201ENSMUST00000179946 522 ntBASIC13.25□□□□□ -0.29
Sdc1P18828 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sdc1P18828 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sdc1P18828 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Sdc1P18828 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sdc1P18828 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC13.25□□□□□ -0.29
Sdc1P18828 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC13.25□□□□□ -0.29
Sdc1P18828 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sdc1P18828 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sdc1P18828 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sdc1P18828 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sdc1P18828 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sdc1P18828 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC13.25□□□□□ -0.29
Sdc1P18828 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sdc1P18828 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Sdc1P18828 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Sdc1P18828 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sdc1P18828 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sdc1P18828 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sdc1P18828 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sdc1P18828 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Sdc1P18828 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sdc1P18828 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Sdc1P18828 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Sdc1P18828 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sdc1P18828 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sdc1P18828 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Sdc1P18828 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sdc1P18828 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Sdc1P18828 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Sdc1P18828 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Sdc1P18828 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC13.24□□□□□ -0.29
Sdc1P18828 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sdc1P18828 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sdc1P18828 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Sdc1P18828 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC13.24□□□□□ -0.29
Sdc1P18828 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Sdc1P18828 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms