Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC15.23■□□□□ 0.03
Msx1P13297 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msx1P13297 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msx1P13297 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msx1P13297 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Msx1P13297 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msx1P13297 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Msx1P13297 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msx1P13297 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msx1P13297 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msx1P13297 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Msx1P13297 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msx1P13297 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msx1P13297 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msx1P13297 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msx1P13297 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msx1P13297 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msx1P13297 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msx1P13297 Gm11594-201ENSMUST00000122313 162 ntBASIC15.22■□□□□ 0.03
Msx1P13297 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC15.22■□□□□ 0.03
Msx1P13297 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Msx1P13297 Gm6376-201ENSMUST00000209407 580 ntBASIC15.22■□□□□ 0.03
Msx1P13297 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Msx1P13297 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC15.22■□□□□ 0.03
Msx1P13297 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msx1P13297 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msx1P13297 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msx1P13297 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
Msx1P13297 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Msx1P13297 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Msx1P13297 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msx1P13297 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msx1P13297 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Msx1P13297 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msx1P13297 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msx1P13297 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC15.22■□□□□ 0.03
Msx1P13297 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Msx1P13297 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC15.21■□□□□ 0.03
Msx1P13297 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Msx1P13297 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Msx1P13297 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Msx1P13297 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Msx1P13297 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Msx1P13297 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Msx1P13297 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Msx1P13297 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Msx1P13297 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Msx1P13297 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Msx1P13297 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Msx1P13297 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Msx1P13297 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Msx1P13297 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC15.21■□□□□ 0.03
Msx1P13297 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Msx1P13297 Rprl3-201ENSMUST00000157400 290 ntBASIC15.21■□□□□ 0.03
Msx1P13297 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC15.21■□□□□ 0.03
Msx1P13297 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC15.21■□□□□ 0.03
Msx1P13297 Gm29707-201ENSMUST00000196325 491 ntBASIC15.21■□□□□ 0.03
Msx1P13297 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Msx1P13297 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Msx1P13297 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Msx1P13297 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Msx1P13297 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Msx1P13297 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Msx1P13297 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
Msx1P13297 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Msx1P13297 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Msx1P13297 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Msx1P13297 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Msx1P13297 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Msx1P13297 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Msx1P13297 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Msx1P13297 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Msx1P13297 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Msx1P13297 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Msx1P13297 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Msx1P13297 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Msx1P13297 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Msx1P13297 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Msx1P13297 Gm7862-201ENSMUST00000121461 292 ntBASIC15.2■□□□□ 0.02
Msx1P13297 AC153794.1-201ENSMUST00000169148 126 ntBASIC15.2■□□□□ 0.02
Msx1P13297 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC15.2■□□□□ 0.02
Msx1P13297 Mir5131-201ENSMUST00000175426 93 ntBASIC15.2■□□□□ 0.02
Msx1P13297 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC15.2■□□□□ 0.02
Msx1P13297 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Msx1P13297 Gm21156-201ENSMUST00000189693 869 ntBASIC15.2■□□□□ 0.02
Msx1P13297 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Msx1P13297 Gm45609-204ENSMUST00000209837 1207 ntTSL 5 BASIC15.2■□□□□ 0.02
Msx1P13297 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Msx1P13297 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC15.2■□□□□ 0.02
Msx1P13297 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Msx1P13297 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Msx1P13297 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Msx1P13297 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Msx1P13297 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Msx1P13297 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Msx1P13297 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Msx1P13297 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Msx1P13297 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC15.2■□□□□ 0.02
Msx1P13297 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Msx1P13297 Gm37166-201ENSMUST00000195473 2474 ntBASIC15.2■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms