Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RaraP11416 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RaraP11416 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
RaraP11416 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RaraP11416 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RaraP11416 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RaraP11416 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
RaraP11416 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RaraP11416 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
RaraP11416 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RaraP11416 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RaraP11416 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RaraP11416 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
RaraP11416 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
RaraP11416 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
RaraP11416 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RaraP11416 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC17.4■□□□□ 0.38
RaraP11416 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RaraP11416 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RaraP11416 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RaraP11416 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RaraP11416 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RaraP11416 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
RaraP11416 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
RaraP11416 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
RaraP11416 Gm15565-201ENSMUST00000118890 427 ntBASIC17.4■□□□□ 0.38
RaraP11416 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC17.4■□□□□ 0.38
RaraP11416 Gm37722-201ENSMUST00000193757 208 ntBASIC17.4■□□□□ 0.38
RaraP11416 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC17.4■□□□□ 0.38
RaraP11416 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RaraP11416 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
RaraP11416 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RaraP11416 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RaraP11416 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC17.4■□□□□ 0.38
RaraP11416 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
RaraP11416 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
RaraP11416 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC17.39■□□□□ 0.38
RaraP11416 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
RaraP11416 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RaraP11416 Gm42901-201ENSMUST00000197735 3171 ntBASIC17.39■□□□□ 0.37
RaraP11416 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RaraP11416 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
RaraP11416 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
RaraP11416 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC17.39■□□□□ 0.37
RaraP11416 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC17.39■□□□□ 0.37
RaraP11416 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
RaraP11416 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
RaraP11416 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC17.39■□□□□ 0.37
RaraP11416 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RaraP11416 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
RaraP11416 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
RaraP11416 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
RaraP11416 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RaraP11416 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RaraP11416 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC17.39■□□□□ 0.37
RaraP11416 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
RaraP11416 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RaraP11416 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RaraP11416 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RaraP11416 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RaraP11416 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC17.38■□□□□ 0.37
RaraP11416 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RaraP11416 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RaraP11416 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
RaraP11416 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RaraP11416 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RaraP11416 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC17.38■□□□□ 0.37
RaraP11416 Gm45212-201ENSMUST00000205831 3403 ntBASIC17.38■□□□□ 0.37
RaraP11416 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RaraP11416 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC17.38■□□□□ 0.37
RaraP11416 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
RaraP11416 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC17.38■□□□□ 0.37
RaraP11416 Gm21559-201ENSMUST00000220638 855 ntBASIC17.38■□□□□ 0.37
RaraP11416 Gm8587-201ENSMUST00000076538 843 ntBASIC17.38■□□□□ 0.37
RaraP11416 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RaraP11416 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RaraP11416 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC17.38■□□□□ 0.37
RaraP11416 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RaraP11416 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RaraP11416 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RaraP11416 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RaraP11416 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RaraP11416 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC17.38■□□□□ 0.37
RaraP11416 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
RaraP11416 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RaraP11416 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RaraP11416 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RaraP11416 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RaraP11416 AC132265.1-201ENSMUST00000219233 1665 ntBASIC17.37■□□□□ 0.37
RaraP11416 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC17.37■□□□□ 0.37
RaraP11416 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC17.37■□□□□ 0.37
RaraP11416 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC17.37■□□□□ 0.37
RaraP11416 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RaraP11416 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
RaraP11416 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
RaraP11416 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
RaraP11416 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RaraP11416 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RaraP11416 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RaraP11416 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms