Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 SNORA72.1-201ENST00000363485 129 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 RNU6-674P-201ENST00000363831 107 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 RNU6-424P-201ENST00000384367 105 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 Y_RNA.567-201ENST00000384736 106 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 RNU6-1186P-201ENST00000410429 97 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC-0.38□□□□□ -2.47
USF3Q68DE3 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC-0.38□□□□□ -2.47
USF3Q68DE3 RNU7-56P-201ENST00000458744 62 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 RNU7-165P-201ENST00000458864 60 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC-0.38□□□□□ -2.47
USF3Q68DE3 RNU6-123P-201ENST00000516163 102 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 AC026616.1-201ENST00000523157 525 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 AP001372.4-201ENST00000524889 472 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC-0.38□□□□□ -2.47
USF3Q68DE3 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC-0.38□□□□□ -2.47
USF3Q68DE3 ZNF92P2-201ENST00000600543 1059 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 AC104458.1-201ENST00000608243 463 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 MIR548AZ-201ENST00000616567 95 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 AL359697.1-201ENST00000624879 587 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 SNORD114-11-201ENST00000363738 75 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 Y_RNA.168-201ENST00000363740 102 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 RNU6-1297P-201ENST00000384415 104 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 MIR320C1-201ENST00000408566 88 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 MED13P1-201ENST00000428342 171 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 AL353997.1-201ENST00000432936 108 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 RPS29P15-201ENST00000458329 171 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 HMGN2P26-201ENST00000463169 339 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 Y_RNA.654-201ENST00000497848 106 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC-0.38□□□□□ -2.47
USF3Q68DE3 MIR5006-201ENST00000583027 110 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 MIR3192-201ENST00000584920 77 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 MTND3P19-201ENST00000603825 345 ntBASIC-0.38□□□□□ -2.47
USF3Q68DE3 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC-0.39□□□□□ -2.47
USF3Q68DE3 MTND5P32-201ENST00000560711 1802 ntBASIC-0.39□□□□□ -2.47
USF3Q68DE3 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC-0.39□□□□□ -2.47
USF3Q68DE3 RNU6-527P-201ENST00000363425 104 ntBASIC-0.39□□□□□ -2.47
USF3Q68DE3 RNY3P13-201ENST00000365542 102 ntBASIC-0.39□□□□□ -2.47
USF3Q68DE3 MIR644A-201ENST00000385262 94 ntBASIC-0.39□□□□□ -2.47
USF3Q68DE3 MT-TQ-201ENST00000387372 72 ntBASIC-0.39□□□□□ -2.47
USF3Q68DE3 RNU6-679P-201ENST00000391003 106 ntBASIC-0.39□□□□□ -2.47
USF3Q68DE3 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC-0.39□□□□□ -2.47
USF3Q68DE3 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC-0.39□□□□□ -2.47
USF3Q68DE3 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC-0.39□□□□□ -2.47
USF3Q68DE3 AC107401.1-201ENST00000503426 685 ntBASIC-0.39□□□□□ -2.47
USF3Q68DE3 MTCO3P42-201ENST00000509488 518 ntBASIC-0.39□□□□□ -2.47
USF3Q68DE3 MTCO3P39-201ENST00000514812 518 ntBASIC-0.39□□□□□ -2.47
USF3Q68DE3 RNA5SP216-201ENST00000516111 123 ntBASIC-0.39□□□□□ -2.47
USF3Q68DE3 RN7SKP164-201ENST00000516138 266 ntBASIC-0.39□□□□□ -2.47
USF3Q68DE3 RNA5SP94-201ENST00000516917 108 ntBASIC-0.39□□□□□ -2.47
USF3Q68DE3 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC-0.39□□□□□ -2.47
USF3Q68DE3 RPL23AP91-201ENST00000569211 455 ntBASIC-0.39□□□□□ -2.47
USF3Q68DE3 AL355297.3-201ENST00000604082 446 ntBASIC-0.39□□□□□ -2.47
USF3Q68DE3 RMST_7.1-201ENST00000621935 268 ntBASIC-0.39□□□□□ -2.47
USF3Q68DE3 AC092104.1-201ENST00000497346 1441 ntBASIC-0.39□□□□□ -2.47
USF3Q68DE3 SNORA33-201ENST00000363664 130 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 RNU6-815P-201ENST00000384080 113 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 SNORA8.2-201ENST00000384372 139 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 MIR526A1-201ENST00000384897 85 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 MIR196A2-201ENST00000385189 110 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 RNU6-1319P-201ENST00000390855 104 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 RNU6-747P-201ENST00000390928 104 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 RNU6-241P-201ENST00000391148 104 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 AL590135.1-201ENST00000422215 156 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 AC019205.3-201ENST00000424573 156 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 AC078809.1-201ENST00000427601 140 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC-0.4□□□□□ -2.47
USF3Q68DE3 AC016700.2-201ENST00000446011 156 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 AC074290.1-201ENST00000448883 135 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 AL163973.1-201ENST00000484753 577 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC-0.4□□□□□ -2.47
USF3Q68DE3 AC015911.1-201ENST00000495111 156 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 AC114811.1-201ENST00000507207 168 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 AC009712.1-201ENST00000564938 316 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 MIR548AO-201ENST00000579992 96 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 AC010525.2-201ENST00000590920 195 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 AC026741.1-201ENST00000605892 482 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 MIR3666-201ENST00000607845 111 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC-0.4□□□□□ -2.47
USF3Q68DE3 RNU6-545P-201ENST00000362681 104 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 RNU5B-1-201ENST00000363286 116 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 SNORA1.1-201ENST00000364671 133 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 Y_RNA.423-201ENST00000384057 113 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 MIR1468-201ENST00000410600 86 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 RNU4-63P-201ENST00000411313 118 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC-0.4□□□□□ -2.47
USF3Q68DE3 AL031779.1-201ENST00000415663 330 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 DEFB130D-201ENST00000426866 237 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 AC007215.1-201ENST00000464893 276 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 AC025449.1-201ENST00000603896 529 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 AC090186.1-201ENST00000605991 572 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 AC007684.1-201ENST00000609671 477 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 AC012409.4-201ENST00000612923 249 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 snoZ196.1-201ENST00000625269 89 ntBASIC-0.4□□□□□ -2.47
USF3Q68DE3 Y_RNA.336-201ENST00000365307 109 ntBASIC-0.41□□□□□ -2.47
USF3Q68DE3 MIR520C-201ENST00000385005 87 ntBASIC-0.41□□□□□ -2.47
USF3Q68DE3 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC-0.41□□□□□ -2.47
USF3Q68DE3 AL049829.1-201ENST00000465411 156 ntBASIC-0.41□□□□□ -2.47
USF3Q68DE3 RPL17P19-201ENST00000489069 552 ntBASIC-0.41□□□□□ -2.47
USF3Q68DE3 RNU6-948P-201ENST00000516374 107 ntBASIC-0.41□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms