Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.49□□□□□ -2.01
HOXA4Q00056 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
HOXA4Q00056 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.48□□□□□ -2.01
HOXA4Q00056 AC080128.1-201ENST00000474389 1917 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
HOXA4Q00056 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
HOXA4Q00056 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
HOXA4Q00056 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.48□□□□□ -2.01
HOXA4Q00056 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
HOXA4Q00056 Y_RNA.82-201ENST00000363000 102 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 Y_RNA.92-201ENST00000363043 102 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 U3.8-201ENST00000363675 217 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 RNU6-324P-201ENST00000363957 106 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 Y_RNA.217-201ENST00000364214 105 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 Y_RNA.235-201ENST00000364412 102 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 Y_RNA.306-201ENST00000365015 102 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 Y_RNA.312-201ENST00000365089 102 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 Y_RNA.322-201ENST00000365151 102 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 RNU6-1062P-201ENST00000383908 107 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 SNORD21-201ENST00000383953 95 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 U6atac.2-201ENST00000408644 118 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.48□□□□□ -2.01
HOXA4Q00056 UQCRHP3-201ENST00000451503 251 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 AL138752.1-201ENST00000452964 351 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 Y_RNA.650-201ENST00000459002 102 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 Y_RNA.644-201ENST00000459006 113 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 Y_RNA.641-201ENST00000459414 105 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 RPL27AP5-201ENST00000469428 449 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 SEM1P1-201ENST00000506694 209 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.48□□□□□ -2.01
HOXA4Q00056 Y_RNA.674-201ENST00000516362 113 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 Y_RNA.777-201ENST00000516982 102 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.48□□□□□ -2.01
HOXA4Q00056 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.48□□□□□ -2.01
HOXA4Q00056 Y_RNA.771-201ENST00000598668 102 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 AC098479.1-201ENST00000609225 154 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 Y_RNA.789-201ENST00000622480 102 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 snoU18.1-201ENST00000629629 71 ntBASIC2.48□□□□□ -2.01
HOXA4Q00056 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.47□□□□□ -2.01
HOXA4Q00056 AC010329.5-201ENST00000623497 2174 ntBASIC2.47□□□□□ -2.01
HOXA4Q00056 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC2.47□□□□□ -2.01
HOXA4Q00056 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.47□□□□□ -2.01
HOXA4Q00056 MIR411-201ENST00000362239 96 ntBASIC2.47□□□□□ -2.01
HOXA4Q00056 RPL21P3-201ENST00000395517 478 ntBASIC2.47□□□□□ -2.01
HOXA4Q00056 AC022018.1-201ENST00000430685 241 ntBASIC2.47□□□□□ -2.01
HOXA4Q00056 Y_RNA.638-201ENST00000459374 113 ntBASIC2.47□□□□□ -2.01
HOXA4Q00056 RN7SL633P-201ENST00000488974 297 ntBASIC2.47□□□□□ -2.01
HOXA4Q00056 AC083906.5-201ENST00000503722 328 ntBASIC2.47□□□□□ -2.01
HOXA4Q00056 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXA4Q00056 ATP5EP1-201ENST00000510257 156 ntBASIC2.47□□□□□ -2.01
HOXA4Q00056 AC024405.2-202ENST00000532731 184 ntBASIC2.47□□□□□ -2.01
HOXA4Q00056 CBX3P4-201ENST00000538909 354 ntBASIC2.47□□□□□ -2.01
HOXA4Q00056 AC008873.1-201ENST00000625051 138 ntBASIC2.47□□□□□ -2.01
HOXA4Q00056 U2.22-201ENST00000636441 106 ntBASIC2.47□□□□□ -2.01
HOXA4Q00056 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.47□□□□□ -2.01
HOXA4Q00056 AC108206.1-201ENST00000570186 4159 ntBASIC2.46□□□□□ -2.01
HOXA4Q00056 SNORD115-30-201ENST00000364117 82 ntBASIC2.46□□□□□ -2.02
HOXA4Q00056 Y_RNA.243-201ENST00000364481 109 ntBASIC2.46□□□□□ -2.02
HOXA4Q00056 MIR586-201ENST00000385035 97 ntBASIC2.46□□□□□ -2.02
HOXA4Q00056 Y_RNA.793-201ENST00000411222 111 ntBASIC2.46□□□□□ -2.02
HOXA4Q00056 AL139132.1-201ENST00000431587 344 ntBASIC2.46□□□□□ -2.02
HOXA4Q00056 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.46□□□□□ -2.02
HOXA4Q00056 AC025750.2-201ENST00000442609 450 ntBASIC2.46□□□□□ -2.02
HOXA4Q00056 SNORD2.1-201ENST00000458762 69 ntBASIC2.46□□□□□ -2.02
HOXA4Q00056 S100A11P2-201ENST00000467589 312 ntBASIC2.46□□□□□ -2.02
HOXA4Q00056 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC2.46□□□□□ -2.02
HOXA4Q00056 HMGN2P9-201ENST00000476875 229 ntBASIC2.46□□□□□ -2.02
HOXA4Q00056 AC107393.1-201ENST00000512403 346 ntBASIC2.46□□□□□ -2.02
HOXA4Q00056 RNY3P16-201ENST00000516338 101 ntBASIC2.46□□□□□ -2.02
HOXA4Q00056 RNU6-965P-201ENST00000516721 96 ntBASIC2.46□□□□□ -2.02
HOXA4Q00056 AC105245.1-201ENST00000581934 244 ntBASIC2.46□□□□□ -2.02
HOXA4Q00056 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.46□□□□□ -2.02
HOXA4Q00056 FTX_2.1-201ENST00000618816 94 ntBASIC2.46□□□□□ -2.02
HOXA4Q00056 AL137790.1-201ENST00000634283 177 ntBASIC2.46□□□□□ -2.02
HOXA4Q00056 MIR7157-201ENST00000635801 60 ntBASIC2.46□□□□□ -2.02
HOXA4Q00056 U6.115-201ENST00000636045 103 ntBASIC2.46□□□□□ -2.02
HOXA4Q00056 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
HOXA4Q00056 AL161431.1-201ENST00000618966 4205 ntBASIC2.46□□□□□ -2.02
HOXA4Q00056 AC103988.1-201ENST00000566382 2177 ntBASIC2.46□□□□□ -2.02
HOXA4Q00056 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
HOXA4Q00056 RNU6-234P-201ENST00000365229 104 ntBASIC2.45□□□□□ -2.02
HOXA4Q00056 MIR181A2-201ENST00000384863 110 ntBASIC2.45□□□□□ -2.02
HOXA4Q00056 MIR483-201ENST00000385070 76 ntBASIC2.45□□□□□ -2.02
HOXA4Q00056 AL031003.1-201ENST00000404229 172 ntBASIC2.45□□□□□ -2.02
HOXA4Q00056 AL139095.1-201ENST00000404326 391 ntBASIC2.45□□□□□ -2.02
HOXA4Q00056 MIR1283-1-201ENST00000408494 87 ntBASIC2.45□□□□□ -2.02
HOXA4Q00056 MIR1289-1-201ENST00000408836 144 ntBASIC2.45□□□□□ -2.02
HOXA4Q00056 EEF1A1P41-201ENST00000414667 207 ntBASIC2.45□□□□□ -2.02
HOXA4Q00056 TOMM22P2-201ENST00000430735 237 ntBASIC2.45□□□□□ -2.02
HOXA4Q00056 NDUFB4P10-201ENST00000452541 359 ntBASIC2.45□□□□□ -2.02
HOXA4Q00056 RPS29P2-201ENST00000479278 136 ntBASIC2.45□□□□□ -2.02
HOXA4Q00056 SCGB1D5P-201ENST00000515134 247 ntBASIC2.45□□□□□ -2.02
HOXA4Q00056 AC109329.2-201ENST00000519658 482 ntBASIC2.45□□□□□ -2.02
HOXA4Q00056 AC079600.2-201ENST00000550076 130 ntBASIC2.45□□□□□ -2.02
HOXA4Q00056 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXA4Q00056 AC069294.1-201ENST00000608397 350 ntBASIC2.45□□□□□ -2.02
HOXA4Q00056 AC006386.2-201ENST00000624491 75 ntBASIC2.45□□□□□ -2.02
HOXA4Q00056 AC012005.1-201ENST00000624575 75 ntBASIC2.45□□□□□ -2.02
HOXA4Q00056 MIR1248-201ENST00000629190 106 ntBASIC2.45□□□□□ -2.02
HOXA4Q00056 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 118.4 ms