Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 RNA5SP504-201ENST00000410676 117 ntBASIC0.19□□□□□ -2.38
CHD3Q12873 AL590135.1-201ENST00000422215 156 ntBASIC0.19□□□□□ -2.38
CHD3Q12873 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC0.19□□□□□ -2.38
CHD3Q12873 AC019205.3-201ENST00000424573 156 ntBASIC0.19□□□□□ -2.38
CHD3Q12873 RPL23AP50-201ENST00000434149 455 ntBASIC0.19□□□□□ -2.38
CHD3Q12873 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.19□□□□□ -2.38
CHD3Q12873 AC016700.2-201ENST00000446011 156 ntBASIC0.19□□□□□ -2.38
CHD3Q12873 AC022364.2-201ENST00000457963 554 ntBASIC0.19□□□□□ -2.38
CHD3Q12873 MTCO2P29-201ENST00000465212 189 ntBASIC0.19□□□□□ -2.38
CHD3Q12873 AC104982.1-201ENST00000478775 574 ntBASIC0.19□□□□□ -2.38
CHD3Q12873 AC015911.1-201ENST00000495111 156 ntBASIC0.19□□□□□ -2.38
CHD3Q12873 AC113410.1-201ENST00000505029 247 ntBASIC0.19□□□□□ -2.38
CHD3Q12873 AP003181.2-201ENST00000528941 181 ntBASIC0.19□□□□□ -2.38
CHD3Q12873 BNIP3P40-201ENST00000596017 556 ntBASIC0.19□□□□□ -2.38
CHD3Q12873 BCRP9-201ENST00000605312 388 ntBASIC0.19□□□□□ -2.38
CHD3Q12873 AC131159.1-201ENST00000621854 213 ntBASIC0.19□□□□□ -2.38
CHD3Q12873 AL445984.1-201ENST00000637834 659 ntBASIC0.19□□□□□ -2.38
CHD3Q12873 Y_RNA.18-201ENST00000362461 102 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 RNU6-39P-201ENST00000384344 107 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 SNORA80D-201ENST00000384488 135 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 RNU6-1031P-201ENST00000384773 107 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 SNORA12.1-201ENST00000390873 148 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 RNA5SP323-201ENST00000391094 133 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC0.18□□□□□ -2.38
CHD3Q12873 MIR300-201ENST00000401138 83 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 MIR1253-201ENST00000408273 105 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC0.18□□□□□ -2.38
CHD3Q12873 C1DP2-201ENST00000418167 426 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 Z95118.1-201ENST00000421372 247 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC0.18□□□□□ -2.38
CHD3Q12873 C1DP4-201ENST00000455429 424 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 U7.7-201ENST00000459276 60 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 RNU7-21P-201ENST00000459430 62 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 BET1P1-201ENST00000482276 359 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 MTND2P31-201ENST00000512602 616 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.18□□□□□ -2.38
CHD3Q12873 SNORA70.12-201ENST00000516084 153 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 AP001372.4-201ENST00000524889 472 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.18□□□□□ -2.38
CHD3Q12873 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC0.18□□□□□ -2.38
CHD3Q12873 AC025627.3-201ENST00000582078 182 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 AC004223.2-201ENST00000590309 544 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 AC007014.2-201ENST00000615581 479 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 MTND4P14-201ENST00000435799 1354 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 RNU6-331P-201ENST00000384724 107 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 AC004866.1-201ENST00000411748 78 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 AC090960.1-201ENST00000421072 306 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 FABP5P4-201ENST00000437203 171 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 ZNF736P4Y-201ENST00000454995 1243 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC0.18□□□□□ -2.38
CHD3Q12873 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC0.18□□□□□ -2.38
CHD3Q12873 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC0.18□□□□□ -2.38
CHD3Q12873 AC080078.2-201ENST00000603766 501 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 AC004832.4-201ENST00000608952 331 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 AL359697.1-201ENST00000624879 587 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 U6.108-201ENST00000637764 58 ntBASIC0.18□□□□□ -2.38
CHD3Q12873 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC0.17□□□□□ -2.38
CHD3Q12873 MIR103A1-201ENST00000362165 78 ntBASIC0.17□□□□□ -2.38
CHD3Q12873 RNU6-433P-201ENST00000363216 104 ntBASIC0.17□□□□□ -2.38
CHD3Q12873 RNA5SP331-201ENST00000364986 107 ntBASIC0.17□□□□□ -2.38
CHD3Q12873 RNU6-83P-201ENST00000384568 112 ntBASIC0.17□□□□□ -2.38
CHD3Q12873 SNORD73A-201ENST00000386062 65 ntBASIC0.17□□□□□ -2.38
CHD3Q12873 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.17□□□□□ -2.38
CHD3Q12873 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC0.17□□□□□ -2.38
CHD3Q12873 AC009237.7-201ENST00000447357 229 ntBASIC0.17□□□□□ -2.38
CHD3Q12873 snoU13.19-201ENST00000459148 104 ntBASIC0.17□□□□□ -2.38
CHD3Q12873 AC097462.1-201ENST00000514125 324 ntBASIC0.17□□□□□ -2.38
CHD3Q12873 AC105417.1-201ENST00000514691 285 ntBASIC0.17□□□□□ -2.38
CHD3Q12873 RNU6-917P-201ENST00000516294 104 ntBASIC0.17□□□□□ -2.38
CHD3Q12873 RNU6-410P-201ENST00000517006 107 ntBASIC0.17□□□□□ -2.38
CHD3Q12873 AC109479.2-201ENST00000517842 174 ntBASIC0.17□□□□□ -2.38
CHD3Q12873 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC0.17□□□□□ -2.38
CHD3Q12873 MIR5190-201ENST00000581537 80 ntBASIC0.17□□□□□ -2.38
CHD3Q12873 AC064872.1-201ENST00000604823 1072 ntBASIC0.17□□□□□ -2.38
CHD3Q12873 AC097065.2-201ENST00000608159 533 ntBASIC0.17□□□□□ -2.38
CHD3Q12873 AC068792.1-201ENST00000621354 417 ntBASIC0.17□□□□□ -2.38
CHD3Q12873 AC006001.4-201ENST00000622243 395 ntBASIC0.17□□□□□ -2.38
CHD3Q12873 AC013437.2-201ENST00000639587 677 ntBASIC0.17□□□□□ -2.38
CHD3Q12873 MIRLET7C-201ENST00000362160 84 ntBASIC0.16□□□□□ -2.38
CHD3Q12873 Y_RNA.22-201ENST00000362492 102 ntBASIC0.16□□□□□ -2.38
CHD3Q12873 RNU4-73P-201ENST00000363164 141 ntBASIC0.16□□□□□ -2.38
CHD3Q12873 U3.9-201ENST00000363823 204 ntBASIC0.16□□□□□ -2.38
CHD3Q12873 RNA5SP368-201ENST00000364298 116 ntBASIC0.16□□□□□ -2.38
CHD3Q12873 RNU6-1327P-201ENST00000365302 105 ntBASIC0.16□□□□□ -2.38
CHD3Q12873 RNU6-434P-201ENST00000384376 107 ntBASIC0.16□□□□□ -2.38
CHD3Q12873 MIR329-1-201ENST00000385028 80 ntBASIC0.16□□□□□ -2.38
CHD3Q12873 RNU2-8P-201ENST00000410727 190 ntBASIC0.16□□□□□ -2.38
CHD3Q12873 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC0.16□□□□□ -2.38
CHD3Q12873 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC0.16□□□□□ -2.38
CHD3Q12873 CETN4P-201ENST00000432407 469 ntBASIC0.16□□□□□ -2.38
CHD3Q12873 GPR143P-201ENST00000434155 205 ntBASIC0.16□□□□□ -2.38
CHD3Q12873 RPL22P17-201ENST00000438729 315 ntBASIC0.16□□□□□ -2.38
CHD3Q12873 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.16□□□□□ -2.38
CHD3Q12873 AC016717.1-201ENST00000448918 286 ntBASIC0.16□□□□□ -2.38
CHD3Q12873 AC008628.2-201ENST00000502605 298 ntBASIC0.16□□□□□ -2.38
CHD3Q12873 AC079140.5-201ENST00000507882 310 ntBASIC0.16□□□□□ -2.38
CHD3Q12873 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC0.16□□□□□ -2.38
CHD3Q12873 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC0.16□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms