Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AL353149.1-201ENST00000610667 244 ntBASIC1.59□□□□□ -2.15
FOXA2Q9Y261 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.59□□□□□ -2.15
FOXA2Q9Y261 Y_RNA.783-201ENST00000613546 102 ntBASIC1.59□□□□□ -2.15
FOXA2Q9Y261 AC006001.4-201ENST00000622243 395 ntBASIC1.59□□□□□ -2.15
FOXA2Q9Y261 AC073869.6-201ENST00000640656 341 ntBASIC1.59□□□□□ -2.15
FOXA2Q9Y261 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.58□□□□□ -2.16
FOXA2Q9Y261 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.58□□□□□ -2.16
FOXA2Q9Y261 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
FOXA2Q9Y261 SNORD115-8-201ENST00000363856 82 ntBASIC1.58□□□□□ -2.16
FOXA2Q9Y261 SNORD115-38-201ENST00000365037 82 ntBASIC1.58□□□□□ -2.16
FOXA2Q9Y261 MIR1277-201ENST00000408536 78 ntBASIC1.58□□□□□ -2.16
FOXA2Q9Y261 RNU6-1148P-201ENST00000410992 104 ntBASIC1.58□□□□□ -2.16
FOXA2Q9Y261 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.58□□□□□ -2.16
FOXA2Q9Y261 AC007098.1-201ENST00000420122 367 ntBASIC1.58□□□□□ -2.16
FOXA2Q9Y261 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.58□□□□□ -2.16
FOXA2Q9Y261 CST2P1-201ENST00000425770 87 ntBASIC1.58□□□□□ -2.16
FOXA2Q9Y261 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.58□□□□□ -2.16
FOXA2Q9Y261 AL445646.1-201ENST00000431784 216 ntBASIC1.58□□□□□ -2.16
FOXA2Q9Y261 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC1.58□□□□□ -2.16
FOXA2Q9Y261 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.58□□□□□ -2.16
FOXA2Q9Y261 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
FOXA2Q9Y261 HSPE1P9-201ENST00000440046 311 ntBASIC1.58□□□□□ -2.16
FOXA2Q9Y261 AC069257.2-201ENST00000441819 155 ntBASIC1.58□□□□□ -2.16
FOXA2Q9Y261 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.58□□□□□ -2.16
FOXA2Q9Y261 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.58□□□□□ -2.16
FOXA2Q9Y261 AC027575.1-201ENST00000481064 460 ntBASIC1.58□□□□□ -2.16
FOXA2Q9Y261 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.58□□□□□ -2.16
FOXA2Q9Y261 AC084364.2-201ENST00000546924 395 ntBASIC1.58□□□□□ -2.16
FOXA2Q9Y261 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.58□□□□□ -2.16
FOXA2Q9Y261 AC016925.2-201ENST00000605108 242 ntBASIC1.58□□□□□ -2.16
FOXA2Q9Y261 MIR6128-201ENST00000615528 109 ntBASIC1.58□□□□□ -2.16
FOXA2Q9Y261 uc_338.20-201ENST00000621563 178 ntBASIC1.58□□□□□ -2.16
FOXA2Q9Y261 AC008873.1-201ENST00000625051 138 ntBASIC1.58□□□□□ -2.16
FOXA2Q9Y261 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.58□□□□□ -2.16
FOXA2Q9Y261 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.58□□□□□ -2.16
FOXA2Q9Y261 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
FOXA2Q9Y261 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
FOXA2Q9Y261 AL117342.1-201ENST00000404861 406 ntBASIC1.57□□□□□ -2.16
FOXA2Q9Y261 MIR1267-201ENST00000408723 78 ntBASIC1.57□□□□□ -2.16
FOXA2Q9Y261 RPL30P16-201ENST00000419341 429 ntBASIC1.57□□□□□ -2.16
FOXA2Q9Y261 FTH1P12-201ENST00000432137 551 ntBASIC1.57□□□□□ -2.16
FOXA2Q9Y261 AL445305.1-201ENST00000432577 575 ntBASIC1.57□□□□□ -2.16
FOXA2Q9Y261 AC245047.4-201ENST00000433189 144 ntBASIC1.57□□□□□ -2.16
FOXA2Q9Y261 HMGN2P34-201ENST00000437647 269 ntBASIC1.57□□□□□ -2.16
FOXA2Q9Y261 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.57□□□□□ -2.16
FOXA2Q9Y261 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.57□□□□□ -2.16
FOXA2Q9Y261 snoU13.9-201ENST00000458927 103 ntBASIC1.57□□□□□ -2.16
FOXA2Q9Y261 RPS29P25-201ENST00000481709 171 ntBASIC1.57□□□□□ -2.16
FOXA2Q9Y261 RPL30P10-201ENST00000488148 337 ntBASIC1.57□□□□□ -2.16
FOXA2Q9Y261 RN7SL274P-201ENST00000492268 272 ntBASIC1.57□□□□□ -2.16
FOXA2Q9Y261 RPL23AP63-201ENST00000498752 471 ntBASIC1.57□□□□□ -2.16
FOXA2Q9Y261 RNU7-175P-201ENST00000515915 61 ntBASIC1.57□□□□□ -2.16
FOXA2Q9Y261 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.57□□□□□ -2.16
FOXA2Q9Y261 MIR4790-201ENST00000577799 79 ntBASIC1.57□□□□□ -2.16
FOXA2Q9Y261 MIR5089-201ENST00000580047 84 ntBASIC1.57□□□□□ -2.16
FOXA2Q9Y261 MIR4285-201ENST00000581001 85 ntBASIC1.57□□□□□ -2.16
FOXA2Q9Y261 AC139792.2-201ENST00000624218 587 ntBASIC1.57□□□□□ -2.16
FOXA2Q9Y261 MIR338-201ENST00000636369 67 ntBASIC1.57□□□□□ -2.16
FOXA2Q9Y261 AC068205.3-201ENST00000636385 468 ntBASIC1.57□□□□□ -2.16
FOXA2Q9Y261 ZNF355P-201ENST00000427301 3216 ntBASIC1.57□□□□□ -2.16
FOXA2Q9Y261 AC027514.1-201ENST00000588561 1603 ntBASIC1.56□□□□□ -2.16
FOXA2Q9Y261 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
FOXA2Q9Y261 MIR126-201ENST00000362291 85 ntBASIC1.56□□□□□ -2.16
FOXA2Q9Y261 snoU2-30.2-201ENST00000362805 70 ntBASIC1.56□□□□□ -2.16
FOXA2Q9Y261 RNU5F-3P-201ENST00000363767 117 ntBASIC1.56□□□□□ -2.16
FOXA2Q9Y261 RNU6-873P-201ENST00000363833 107 ntBASIC1.56□□□□□ -2.16
FOXA2Q9Y261 RNU6-280P-201ENST00000364145 104 ntBASIC1.56□□□□□ -2.16
FOXA2Q9Y261 AC019129.1-201ENST00000403786 261 ntBASIC1.56□□□□□ -2.16
FOXA2Q9Y261 OOSP1P1-201ENST00000423265 274 ntBASIC1.56□□□□□ -2.16
FOXA2Q9Y261 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.56□□□□□ -2.16
FOXA2Q9Y261 RNU4-49P-201ENST00000516080 140 ntBASIC1.56□□□□□ -2.16
FOXA2Q9Y261 RNA5SP481-201ENST00000516814 122 ntBASIC1.56□□□□□ -2.16
FOXA2Q9Y261 RNA5SP437-201ENST00000517249 129 ntBASIC1.56□□□□□ -2.16
FOXA2Q9Y261 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.56□□□□□ -2.16
FOXA2Q9Y261 MIR5696-201ENST00000578474 85 ntBASIC1.56□□□□□ -2.16
FOXA2Q9Y261 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.56□□□□□ -2.16
FOXA2Q9Y261 snoZ196.1-201ENST00000625269 89 ntBASIC1.56□□□□□ -2.16
FOXA2Q9Y261 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
FOXA2Q9Y261 RNU6-137P-201ENST00000363680 108 ntBASIC1.55□□□□□ -2.16
FOXA2Q9Y261 SNORA72.2-201ENST00000365028 127 ntBASIC1.55□□□□□ -2.16
FOXA2Q9Y261 Y_RNA.533-201ENST00000384596 114 ntBASIC1.55□□□□□ -2.16
FOXA2Q9Y261 RNU6-360P-201ENST00000390944 104 ntBASIC1.55□□□□□ -2.16
FOXA2Q9Y261 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
FOXA2Q9Y261 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.55□□□□□ -2.16
FOXA2Q9Y261 AC008134.1-201ENST00000420943 193 ntBASIC1.55□□□□□ -2.16
FOXA2Q9Y261 AC243428.1-201ENST00000421099 264 ntBASIC1.55□□□□□ -2.16
FOXA2Q9Y261 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.55□□□□□ -2.16
FOXA2Q9Y261 RN7SKP210-201ENST00000459176 261 ntBASIC1.55□□□□□ -2.16
FOXA2Q9Y261 AC005908.1-201ENST00000468701 347 ntBASIC1.55□□□□□ -2.16
FOXA2Q9Y261 RN7SL429P-201ENST00000479090 223 ntBASIC1.55□□□□□ -2.16
FOXA2Q9Y261 RN7SL489P-201ENST00000486185 223 ntBASIC1.55□□□□□ -2.16
FOXA2Q9Y261 RN7SL327P-201ENST00000488659 223 ntBASIC1.55□□□□□ -2.16
FOXA2Q9Y261 AC134698.4-201ENST00000523451 826 ntBASIC1.55□□□□□ -2.16
FOXA2Q9Y261 AL590705.4-201ENST00000532209 134 ntBASIC1.55□□□□□ -2.16
FOXA2Q9Y261 CBX3P4-201ENST00000538909 354 ntBASIC1.55□□□□□ -2.16
FOXA2Q9Y261 AC027288.2-201ENST00000553028 243 ntBASIC1.55□□□□□ -2.16
FOXA2Q9Y261 AC018638.8-201ENST00000588755 281 ntBASIC1.55□□□□□ -2.16
FOXA2Q9Y261 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.55□□□□□ -2.16
FOXA2Q9Y261 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.55□□□□□ -2.16
FOXA2Q9Y261 RN7SL853P-201ENST00000617250 223 ntBASIC1.55□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 256.8 ms