Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC022513.1-201ENST00000624512 117 ntBASIC1.63□□□□□ -2.15
LHX3Q9UBR4 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.63□□□□□ -2.15
LHX3Q9UBR4 AC006026.1-201ENST00000444025 1803 ntBASIC1.63□□□□□ -2.15
LHX3Q9UBR4 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.63□□□□□ -2.15
LHX3Q9UBR4 AL159152.1-201ENST00000635019 2587 ntBASIC1.62□□□□□ -2.15
LHX3Q9UBR4 MIR320B2-201ENST00000408479 138 ntBASIC1.62□□□□□ -2.15
LHX3Q9UBR4 MIR1283-1-201ENST00000408494 87 ntBASIC1.62□□□□□ -2.15
LHX3Q9UBR4 MIR1277-201ENST00000408536 78 ntBASIC1.62□□□□□ -2.15
LHX3Q9UBR4 FCF1P9-201ENST00000412546 282 ntBASIC1.62□□□□□ -2.15
LHX3Q9UBR4 MTCO3P46-201ENST00000425787 232 ntBASIC1.62□□□□□ -2.15
LHX3Q9UBR4 DAP3P1-201ENST00000441522 278 ntBASIC1.62□□□□□ -2.15
LHX3Q9UBR4 AL357134.1-201ENST00000445848 426 ntBASIC1.62□□□□□ -2.15
LHX3Q9UBR4 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.62□□□□□ -2.15
LHX3Q9UBR4 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.62□□□□□ -2.15
LHX3Q9UBR4 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.62□□□□□ -2.15
LHX3Q9UBR4 MIR4769-201ENST00000584126 77 ntBASIC1.62□□□□□ -2.15
LHX3Q9UBR4 MIR4753-201ENST00000585119 83 ntBASIC1.62□□□□□ -2.15
LHX3Q9UBR4 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.62□□□□□ -2.15
LHX3Q9UBR4 SNRPGP20-201ENST00000604477 205 ntBASIC1.62□□□□□ -2.15
LHX3Q9UBR4 AC124303.1-201ENST00000605703 360 ntBASIC1.62□□□□□ -2.15
LHX3Q9UBR4 AC103810.8-201ENST00000607347 118 ntBASIC1.62□□□□□ -2.15
LHX3Q9UBR4 AC093913.1-201ENST00000614178 329 ntBASIC1.62□□□□□ -2.15
LHX3Q9UBR4 AC098679.4-201ENST00000624241 654 ntBASIC1.62□□□□□ -2.15
LHX3Q9UBR4 MTND4P5-201ENST00000435821 1374 ntBASIC1.61□□□□□ -2.15
LHX3Q9UBR4 RNA5SP432-201ENST00000362480 116 ntBASIC1.61□□□□□ -2.15
LHX3Q9UBR4 RNU6-192P-201ENST00000391253 100 ntBASIC1.61□□□□□ -2.15
LHX3Q9UBR4 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
LHX3Q9UBR4 EIF1P1-201ENST00000421436 341 ntBASIC1.61□□□□□ -2.15
LHX3Q9UBR4 MTND4LP16-201ENST00000440828 295 ntBASIC1.61□□□□□ -2.15
LHX3Q9UBR4 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.61□□□□□ -2.15
LHX3Q9UBR4 NFU1P2-201ENST00000448700 469 ntBASIC1.61□□□□□ -2.15
LHX3Q9UBR4 ATP5J2P3-201ENST00000451550 258 ntBASIC1.61□□□□□ -2.15
LHX3Q9UBR4 AC079354.2-201ENST00000453523 154 ntBASIC1.61□□□□□ -2.15
LHX3Q9UBR4 MTCO3P8-201ENST00000453691 755 ntBASIC1.61□□□□□ -2.15
LHX3Q9UBR4 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.61□□□□□ -2.15
LHX3Q9UBR4 AC069439.1-201ENST00000494739 167 ntBASIC1.61□□□□□ -2.15
LHX3Q9UBR4 AC067942.3-201ENST00000512025 362 ntBASIC1.61□□□□□ -2.15
LHX3Q9UBR4 ACA59.1-201ENST00000515966 143 ntBASIC1.61□□□□□ -2.15
LHX3Q9UBR4 RNU4-49P-201ENST00000516080 140 ntBASIC1.61□□□□□ -2.15
LHX3Q9UBR4 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.61□□□□□ -2.15
LHX3Q9UBR4 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.61□□□□□ -2.15
LHX3Q9UBR4 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.61□□□□□ -2.15
LHX3Q9UBR4 MIR5094-201ENST00000578766 85 ntBASIC1.61□□□□□ -2.15
LHX3Q9UBR4 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.61□□□□□ -2.15
LHX3Q9UBR4 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.61□□□□□ -2.15
LHX3Q9UBR4 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.61□□□□□ -2.15
LHX3Q9UBR4 AC002553.4-201ENST00000616896 331 ntBASIC1.61□□□□□ -2.15
LHX3Q9UBR4 AC006504.8-201ENST00000621046 635 ntBASIC1.61□□□□□ -2.15
LHX3Q9UBR4 SCARNA4-201ENST00000629045 128 ntBASIC1.61□□□□□ -2.15
LHX3Q9UBR4 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
LHX3Q9UBR4 Y_RNA.86-201ENST00000363020 111 ntBASIC1.6□□□□□ -2.15
LHX3Q9UBR4 RNU6-457P-201ENST00000363999 107 ntBASIC1.6□□□□□ -2.15
LHX3Q9UBR4 RNU6-418P-201ENST00000384035 107 ntBASIC1.6□□□□□ -2.15
LHX3Q9UBR4 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.6□□□□□ -2.15
LHX3Q9UBR4 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.6□□□□□ -2.15
LHX3Q9UBR4 Z82188.1-201ENST00000436709 154 ntBASIC1.6□□□□□ -2.15
LHX3Q9UBR4 AC009237.7-201ENST00000447357 229 ntBASIC1.6□□□□□ -2.15
LHX3Q9UBR4 FO393415.2-201ENST00000480085 343 ntBASIC1.6□□□□□ -2.15
LHX3Q9UBR4 AC010409.1-201ENST00000487382 476 ntBASIC1.6□□□□□ -2.15
LHX3Q9UBR4 HMGB3P17-201ENST00000504195 649 ntBASIC1.6□□□□□ -2.15
LHX3Q9UBR4 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.6□□□□□ -2.15
LHX3Q9UBR4 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.6□□□□□ -2.15
LHX3Q9UBR4 SNORA59B-202ENST00000578183 701 ntBASIC1.6□□□□□ -2.15
LHX3Q9UBR4 AC012493.3-201ENST00000604494 112 ntBASIC1.6□□□□□ -2.15
LHX3Q9UBR4 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.6□□□□□ -2.15
LHX3Q9UBR4 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.6□□□□□ -2.15
LHX3Q9UBR4 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
LHX3Q9UBR4 BX322639.1-202ENST00000423987 2213 ntBASIC1.59□□□□□ -2.15
LHX3Q9UBR4 RNU6-1013P-201ENST00000384180 107 ntBASIC1.59□□□□□ -2.15
LHX3Q9UBR4 MIR32-201ENST00000384965 70 ntBASIC1.59□□□□□ -2.15
LHX3Q9UBR4 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
LHX3Q9UBR4 RNU6-482P-201ENST00000391068 107 ntBASIC1.59□□□□□ -2.15
LHX3Q9UBR4 MIR1323-201ENST00000408090 73 ntBASIC1.59□□□□□ -2.15
LHX3Q9UBR4 AC004866.1-201ENST00000411748 78 ntBASIC1.59□□□□□ -2.15
LHX3Q9UBR4 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.59□□□□□ -2.15
LHX3Q9UBR4 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.59□□□□□ -2.15
LHX3Q9UBR4 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
LHX3Q9UBR4 RNU2-34P-201ENST00000516534 121 ntBASIC1.59□□□□□ -2.15
LHX3Q9UBR4 RNU6-566P-201ENST00000516790 107 ntBASIC1.59□□□□□ -2.15
LHX3Q9UBR4 RNU6-856P-201ENST00000516959 98 ntBASIC1.59□□□□□ -2.15
LHX3Q9UBR4 RNA5SP454-201ENST00000517231 127 ntBASIC1.59□□□□□ -2.15
LHX3Q9UBR4 RRN3P3-201ENST00000549207 578 ntBASIC1.59□□□□□ -2.15
LHX3Q9UBR4 MIR3122-201ENST00000577243 73 ntBASIC1.59□□□□□ -2.15
LHX3Q9UBR4 MIR4303-201ENST00000581299 66 ntBASIC1.59□□□□□ -2.15
LHX3Q9UBR4 AC010928.2-201ENST00000588017 287 ntBASIC1.59□□□□□ -2.15
LHX3Q9UBR4 AP003465.2-201ENST00000602571 373 ntBASIC1.59□□□□□ -2.15
LHX3Q9UBR4 ZNF204P-201ENST00000416749 2397 ntBASIC1.58□□□□□ -2.16
LHX3Q9UBR4 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
LHX3Q9UBR4 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
LHX3Q9UBR4 RNU4-9P-201ENST00000364951 139 ntBASIC1.58□□□□□ -2.16
LHX3Q9UBR4 U8.10-201ENST00000384260 133 ntBASIC1.58□□□□□ -2.16
LHX3Q9UBR4 RPL21P111-201ENST00000418453 477 ntBASIC1.58□□□□□ -2.16
LHX3Q9UBR4 MTATP6P13-201ENST00000438531 667 ntBASIC1.58□□□□□ -2.16
LHX3Q9UBR4 AC112492.4-201ENST00000456549 352 ntBASIC1.58□□□□□ -2.16
LHX3Q9UBR4 AC114982.1-201ENST00000469402 321 ntBASIC1.58□□□□□ -2.16
LHX3Q9UBR4 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.58□□□□□ -2.16
LHX3Q9UBR4 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.58□□□□□ -2.16
LHX3Q9UBR4 RNU6-948P-201ENST00000516374 107 ntBASIC1.58□□□□□ -2.16
LHX3Q9UBR4 RNA5SP54-201ENST00000516951 92 ntBASIC1.58□□□□□ -2.16
LHX3Q9UBR4 SNORA31.17-201ENST00000516953 127 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 150.4 ms