Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 SMURF2P1-201ENST00000514992 481 ntBASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 SNORA25.15-201ENST00000516487 89 ntBASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 AC002984.1-201ENST00000591692 448 ntBASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 AL356157.2-201ENST00000605122 111 ntBASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
UPF3AQ9H1J1 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 Z75746.1-201ENST00000440243 2080 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 RNY1P16-201ENST00000363063 111 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 SNORD114-19-201ENST00000363072 75 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 Y_RNA.112-201ENST00000363250 102 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 RNU6-99P-201ENST00000364721 107 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 RNA5SP160-201ENST00000364866 120 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 RNU6-1083P-201ENST00000384022 107 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 RNA5SP494-201ENST00000410653 129 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 AC138623.1-201ENST00000418060 216 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 AC097463.2-201ENST00000421074 142 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 EIF4EP4-201ENST00000424916 578 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 AC078809.1-201ENST00000427601 140 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 RPL30P4-201ENST00000429309 333 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 GPM6BP3-201ENST00000442797 145 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 AC124916.1-201ENST00000444020 547 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 RPL23AP7-203ENST00000449021 469 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 CHEK2P4-201ENST00000450340 246 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 AL353752.1-201ENST00000454946 260 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 RPS27P21-201ENST00000486977 252 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 RNU6-1170P-201ENST00000515974 106 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 MIR514B-201ENST00000516774 80 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 RNA5SP364-201ENST00000516938 78 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 CYCSP26-201ENST00000534107 320 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 SUB1P3-201ENST00000564581 315 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 MIR3171-201ENST00000584270 74 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 AC134503.1-201ENST00000633048 54 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 MTND4P27-201ENST00000450813 1354 ntBASIC2.07□□□□□ -2.08
UPF3AQ9H1J1 MIR378A-201ENST00000362177 66 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 RNU6-661P-201ENST00000362409 107 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 RNU6-212P-201ENST00000362642 104 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 RNU6-968P-201ENST00000384076 107 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 U8.10-201ENST00000384260 133 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 RNU1-57P-201ENST00000384491 166 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 RNU6-1011P-201ENST00000384668 107 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 RNU2-20P-201ENST00000410425 191 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 EIF1AXP1-201ENST00000419267 435 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 MICF-203ENST00000432679 129 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 AC012308.1-201ENST00000451232 178 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 snoU13.6-201ENST00000458785 104 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 AC068781.1-201ENST00000488231 618 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 RPL17P19-201ENST00000489069 552 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 HMGB1P35-201ENST00000503360 598 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 AC021146.2-201ENST00000504736 556 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 AC105758.1-201ENST00000506038 399 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 Y_RNA.711-201ENST00000516993 102 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 AC109329.1-201ENST00000518744 317 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 AC007375.1-201ENST00000554513 578 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 AC005899.2-201ENST00000584353 90 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 MIR4765-201ENST00000585007 77 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 AC073410.2-201ENST00000603240 332 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 AC007792.1-201ENST00000623023 402 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 SNORD98-201ENST00000636377 67 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 AC233981.2-201ENST00000611524 1614 ntBASIC2.06□□□□□ -2.08
UPF3AQ9H1J1 AP000560.1-201ENST00000624150 1937 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 RNU4-15P-201ENST00000362613 141 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 RNU6-490P-201ENST00000362985 107 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 RNY3P11-201ENST00000364153 102 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 Y_RNA.226-201ENST00000364337 114 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 Y_RNA.252-201ENST00000364556 101 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 Y_RNA.326-201ENST00000365176 113 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 MIR548P-201ENST00000408336 84 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 BTF3P4-201ENST00000418852 495 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 AL590135.1-201ENST00000422215 156 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 AC019205.3-201ENST00000424573 156 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 AC005534.2-201ENST00000431047 433 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 AC016700.2-201ENST00000446011 156 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 AL441985.1-201ENST00000457727 251 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 Y_RNA.631-201ENST00000459607 101 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 AC015911.1-201ENST00000495111 156 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 AC016632.1-201ENST00000503994 196 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 MIR4781-201ENST00000585250 76 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 AC022432.1-201ENST00000595739 310 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 Z98751.3-201ENST00000604447 521 ntBASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 140.9 ms