Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 RPL23AP82-202ENST00000427528 469 ntBASIC4.25□□□□□ -1.73
CHMP3Q9Y3E7 CR769767.1-201ENST00000436337 346 ntBASIC4.25□□□□□ -1.73
CHMP3Q9Y3E7 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC4.25□□□□□ -1.73
CHMP3Q9Y3E7 AC021269.2-201ENST00000532318 330 ntBASIC4.25□□□□□ -1.73
CHMP3Q9Y3E7 MIR3200-201ENST00000580767 85 ntBASIC4.25□□□□□ -1.73
CHMP3Q9Y3E7 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC4.25□□□□□ -1.73
CHMP3Q9Y3E7 RPS15AP11-201ENST00000594193 385 ntBASIC4.25□□□□□ -1.73
CHMP3Q9Y3E7 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.25□□□□□ -1.73
CHMP3Q9Y3E7 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
CHMP3Q9Y3E7 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC4.25□□□□□ -1.73
CHMP3Q9Y3E7 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC4.25□□□□□ -1.73
CHMP3Q9Y3E7 AL672296.1-201ENST00000427780 2158 ntBASIC4.24□□□□□ -1.73
CHMP3Q9Y3E7 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC4.24□□□□□ -1.73
CHMP3Q9Y3E7 RNU4-15P-201ENST00000362613 141 ntBASIC4.24□□□□□ -1.73
CHMP3Q9Y3E7 SNORA9-201ENST00000384215 133 ntBASIC4.24□□□□□ -1.73
CHMP3Q9Y3E7 AL031003.1-201ENST00000404229 172 ntBASIC4.24□□□□□ -1.73
CHMP3Q9Y3E7 AC002075.2-201ENST00000425207 252 ntBASIC4.24□□□□□ -1.73
CHMP3Q9Y3E7 ATP6V0E1P4-201ENST00000427294 242 ntBASIC4.24□□□□□ -1.73
CHMP3Q9Y3E7 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC4.24□□□□□ -1.73
CHMP3Q9Y3E7 AC004386.2-201ENST00000441858 148 ntBASIC4.24□□□□□ -1.73
CHMP3Q9Y3E7 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC4.24□□□□□ -1.73
CHMP3Q9Y3E7 RPS29P31-201ENST00000446147 164 ntBASIC4.24□□□□□ -1.73
CHMP3Q9Y3E7 RPL23AP70-201ENST00000483361 460 ntBASIC4.24□□□□□ -1.73
CHMP3Q9Y3E7 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC4.24□□□□□ -1.73
CHMP3Q9Y3E7 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC4.24□□□□□ -1.73
CHMP3Q9Y3E7 AC069294.1-201ENST00000608397 350 ntBASIC4.24□□□□□ -1.73
CHMP3Q9Y3E7 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC4.24□□□□□ -1.73
CHMP3Q9Y3E7 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.24□□□□□ -1.73
CHMP3Q9Y3E7 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CHMP3Q9Y3E7 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC4.24□□□□□ -1.73
CHMP3Q9Y3E7 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
CHMP3Q9Y3E7 RNU6-19P-201ENST00000384718 107 ntBASIC4.23□□□□□ -1.73
CHMP3Q9Y3E7 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
CHMP3Q9Y3E7 RNU6-239P-201ENST00000390990 99 ntBASIC4.23□□□□□ -1.73
CHMP3Q9Y3E7 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC4.23□□□□□ -1.73
CHMP3Q9Y3E7 MIR4738-201ENST00000579134 87 ntBASIC4.23□□□□□ -1.73
CHMP3Q9Y3E7 SNORD11B-201ENST00000607707 90 ntBASIC4.23□□□□□ -1.73
CHMP3Q9Y3E7 AC013791.1-201ENST00000616619 62 ntBASIC4.23□□□□□ -1.73
CHMP3Q9Y3E7 MIR3651-201ENST00000630427 90 ntBASIC4.23□□□□□ -1.73
CHMP3Q9Y3E7 MIR3658-201ENST00000636291 56 ntBASIC4.23□□□□□ -1.73
CHMP3Q9Y3E7 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC4.23□□□□□ -1.73
CHMP3Q9Y3E7 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CHMP3Q9Y3E7 AC010329.5-201ENST00000623497 2174 ntBASIC4.23□□□□□ -1.73
CHMP3Q9Y3E7 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 AC091152.2-201ENST00000591628 2569 ntBASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 RNA5SP295-201ENST00000362655 121 ntBASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 SNORA18.2-201ENST00000383865 132 ntBASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 RHEBP3-201ENST00000411920 351 ntBASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 AIMP1P2-201ENST00000425294 312 ntBASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 AC010409.1-201ENST00000487382 476 ntBASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 SNORA74D-201ENST00000516404 141 ntBASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 AC136628.3-201ENST00000521868 290 ntBASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 MIR3684-201ENST00000579779 74 ntBASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 AL078604.3-201ENST00000615580 211 ntBASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 AC005562.2-201ENST00000618264 111 ntBASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 AC022149.2-201ENST00000621061 203 ntBASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
CHMP3Q9Y3E7 AC093908.1-201ENST00000623125 8092 ntBASIC4.21□□□□□ -1.73
CHMP3Q9Y3E7 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
CHMP3Q9Y3E7 Y_RNA.261-201ENST00000364631 102 ntBASIC4.21□□□□□ -1.74
CHMP3Q9Y3E7 Y_RNA.293-201ENST00000364908 93 ntBASIC4.21□□□□□ -1.74
CHMP3Q9Y3E7 RNU4-11P-201ENST00000365287 132 ntBASIC4.21□□□□□ -1.74
CHMP3Q9Y3E7 SNORA20-201ENST00000384662 132 ntBASIC4.21□□□□□ -1.74
CHMP3Q9Y3E7 MIR483-201ENST00000385070 76 ntBASIC4.21□□□□□ -1.74
CHMP3Q9Y3E7 RNU6-578P-201ENST00000390980 103 ntBASIC4.21□□□□□ -1.74
CHMP3Q9Y3E7 AL591034.1-201ENST00000407447 340 ntBASIC4.21□□□□□ -1.74
CHMP3Q9Y3E7 Z98941.1-201ENST00000407764 100 ntBASIC4.21□□□□□ -1.74
CHMP3Q9Y3E7 AL357552.1-201ENST00000445254 415 ntBASIC4.21□□□□□ -1.74
CHMP3Q9Y3E7 SNORA25.12-201ENST00000516202 82 ntBASIC4.21□□□□□ -1.74
CHMP3Q9Y3E7 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.21□□□□□ -1.74
CHMP3Q9Y3E7 MIR548X2-201ENST00000579776 100 ntBASIC4.21□□□□□ -1.74
CHMP3Q9Y3E7 MIR5006-201ENST00000583027 110 ntBASIC4.21□□□□□ -1.74
CHMP3Q9Y3E7 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4.21□□□□□ -1.74
CHMP3Q9Y3E7 AC068205.3-201ENST00000636385 468 ntBASIC4.21□□□□□ -1.74
CHMP3Q9Y3E7 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
CHMP3Q9Y3E7 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CHMP3Q9Y3E7 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.21□□□□□ -1.74
CHMP3Q9Y3E7 MFSD8-233ENST00000641482 4860 ntBASIC4.21□□□□□ -1.74
CHMP3Q9Y3E7 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
CHMP3Q9Y3E7 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CHMP3Q9Y3E7 SNORA38.1-201ENST00000364172 131 ntBASIC4.2□□□□□ -1.74
CHMP3Q9Y3E7 RNA5-8SP4-201ENST00000365096 150 ntBASIC4.2□□□□□ -1.74
CHMP3Q9Y3E7 RNU6-748P-201ENST00000384648 107 ntBASIC4.2□□□□□ -1.74
CHMP3Q9Y3E7 ARF4P2-201ENST00000430209 526 ntBASIC4.2□□□□□ -1.74
CHMP3Q9Y3E7 AL714022.1-201ENST00000439897 151 ntBASIC4.2□□□□□ -1.74
CHMP3Q9Y3E7 AC145146.1-201ENST00000496370 254 ntBASIC4.2□□□□□ -1.74
CHMP3Q9Y3E7 SCARNA8-201ENST00000515924 131 ntBASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms