Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 MIR517A-201ENST00000385001 87 ntBASIC1.71□□□□□ -2.14
DDX28Q9NUL7 SNORA26.9-201ENST00000391322 122 ntBASIC1.71□□□□□ -2.14
DDX28Q9NUL7 AL033519.2-201ENST00000403958 392 ntBASIC1.71□□□□□ -2.14
DDX28Q9NUL7 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.71□□□□□ -2.14
DDX28Q9NUL7 MTCO1P44-201ENST00000441935 243 ntBASIC1.71□□□□□ -2.14
DDX28Q9NUL7 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.71□□□□□ -2.14
DDX28Q9NUL7 HMGN2P23-201ENST00000456759 269 ntBASIC1.71□□□□□ -2.14
DDX28Q9NUL7 AC092989.1-201ENST00000481235 277 ntBASIC1.71□□□□□ -2.14
DDX28Q9NUL7 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.71□□□□□ -2.14
DDX28Q9NUL7 AC011352.1-201ENST00000512300 793 ntBASIC1.71□□□□□ -2.14
DDX28Q9NUL7 ACA59.1-201ENST00000515966 143 ntBASIC1.71□□□□□ -2.14
DDX28Q9NUL7 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.71□□□□□ -2.14
DDX28Q9NUL7 MIR3942-201ENST00000585264 109 ntBASIC1.71□□□□□ -2.14
DDX28Q9NUL7 AC010928.2-201ENST00000588017 287 ntBASIC1.71□□□□□ -2.14
DDX28Q9NUL7 AP003465.2-201ENST00000602571 373 ntBASIC1.71□□□□□ -2.14
DDX28Q9NUL7 SNRPGP20-201ENST00000604477 205 ntBASIC1.71□□□□□ -2.14
DDX28Q9NUL7 AC124303.1-201ENST00000605703 360 ntBASIC1.71□□□□□ -2.14
DDX28Q9NUL7 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
DDX28Q9NUL7 RNU6-545P-201ENST00000362681 104 ntBASIC1.7□□□□□ -2.14
DDX28Q9NUL7 Y_RNA.140-201ENST00000363474 103 ntBASIC1.7□□□□□ -2.14
DDX28Q9NUL7 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.7□□□□□ -2.14
DDX28Q9NUL7 MIR1277-201ENST00000408536 78 ntBASIC1.7□□□□□ -2.14
DDX28Q9NUL7 RPS20P15-201ENST00000412792 311 ntBASIC1.7□□□□□ -2.14
DDX28Q9NUL7 AC009310.1-201ENST00000414414 451 ntBASIC1.7□□□□□ -2.14
DDX28Q9NUL7 AL603825.1-201ENST00000438481 80 ntBASIC1.7□□□□□ -2.14
DDX28Q9NUL7 MTND4LP16-201ENST00000440828 295 ntBASIC1.7□□□□□ -2.14
DDX28Q9NUL7 AC004386.2-201ENST00000441858 148 ntBASIC1.7□□□□□ -2.14
DDX28Q9NUL7 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.7□□□□□ -2.14
DDX28Q9NUL7 AC079354.2-201ENST00000453523 154 ntBASIC1.7□□□□□ -2.14
DDX28Q9NUL7 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.7□□□□□ -2.14
DDX28Q9NUL7 RNU6-718P-201ENST00000516166 105 ntBASIC1.7□□□□□ -2.14
DDX28Q9NUL7 RNVU1-2-201ENST00000516326 135 ntBASIC1.7□□□□□ -2.14
DDX28Q9NUL7 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.7□□□□□ -2.14
DDX28Q9NUL7 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.7□□□□□ -2.14
DDX28Q9NUL7 AC022254.1-201ENST00000567857 235 ntBASIC1.7□□□□□ -2.14
DDX28Q9NUL7 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC1.7□□□□□ -2.14
DDX28Q9NUL7 MIR4713-201ENST00000582691 75 ntBASIC1.7□□□□□ -2.14
DDX28Q9NUL7 MIR5006-201ENST00000583027 110 ntBASIC1.7□□□□□ -2.14
DDX28Q9NUL7 AC068790.6-201ENST00000602558 258 ntBASIC1.7□□□□□ -2.14
DDX28Q9NUL7 AC009318.2-201ENST00000610917 651 ntBASIC1.7□□□□□ -2.14
DDX28Q9NUL7 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.7□□□□□ -2.14
DDX28Q9NUL7 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.7□□□□□ -2.14
DDX28Q9NUL7 SCARNA4-201ENST00000629045 128 ntBASIC1.7□□□□□ -2.14
DDX28Q9NUL7 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.7□□□□□ -2.14
DDX28Q9NUL7 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.69□□□□□ -2.14
DDX28Q9NUL7 Y_RNA.338-201ENST00000365320 114 ntBASIC1.69□□□□□ -2.14
DDX28Q9NUL7 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.69□□□□□ -2.14
DDX28Q9NUL7 RNU6-831P-201ENST00000384548 107 ntBASIC1.69□□□□□ -2.14
DDX28Q9NUL7 MIR320B2-201ENST00000408479 138 ntBASIC1.69□□□□□ -2.14
DDX28Q9NUL7 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
DDX28Q9NUL7 Z82205.1-201ENST00000428456 297 ntBASIC1.69□□□□□ -2.14
DDX28Q9NUL7 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.69□□□□□ -2.14
DDX28Q9NUL7 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.69□□□□□ -2.14
DDX28Q9NUL7 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.69□□□□□ -2.14
DDX28Q9NUL7 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC1.69□□□□□ -2.14
DDX28Q9NUL7 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.69□□□□□ -2.14
DDX28Q9NUL7 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.69□□□□□ -2.14
DDX28Q9NUL7 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.69□□□□□ -2.14
DDX28Q9NUL7 MIR4285-201ENST00000581001 85 ntBASIC1.69□□□□□ -2.14
DDX28Q9NUL7 AC010900.2-201ENST00000604508 210 ntBASIC1.69□□□□□ -2.14
DDX28Q9NUL7 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.69□□□□□ -2.14
DDX28Q9NUL7 AC002553.4-201ENST00000616896 331 ntBASIC1.69□□□□□ -2.14
DDX28Q9NUL7 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.69□□□□□ -2.14
DDX28Q9NUL7 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.69□□□□□ -2.14
DDX28Q9NUL7 MTND4P5-201ENST00000435821 1374 ntBASIC1.69□□□□□ -2.14
DDX28Q9NUL7 BX322639.1-202ENST00000423987 2213 ntBASIC1.68□□□□□ -2.14
DDX28Q9NUL7 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
DDX28Q9NUL7 AC245060.5-201ENST00000610778 3293 ntBASIC1.68□□□□□ -2.14
DDX28Q9NUL7 MTND5P9-201ENST00000503854 1755 ntBASIC1.68□□□□□ -2.14
DDX28Q9NUL7 RNU4-9P-201ENST00000364951 139 ntBASIC1.68□□□□□ -2.14
DDX28Q9NUL7 RNA5SP363-201ENST00000365072 115 ntBASIC1.68□□□□□ -2.14
DDX28Q9NUL7 MIR1283-1-201ENST00000408494 87 ntBASIC1.68□□□□□ -2.14
DDX28Q9NUL7 RNU6-1148P-201ENST00000410992 104 ntBASIC1.68□□□□□ -2.14
DDX28Q9NUL7 FCF1P9-201ENST00000412546 282 ntBASIC1.68□□□□□ -2.14
DDX28Q9NUL7 EIF1P1-201ENST00000421436 341 ntBASIC1.68□□□□□ -2.14
DDX28Q9NUL7 AL358453.1-201ENST00000422522 250 ntBASIC1.68□□□□□ -2.14
DDX28Q9NUL7 MTCO3P46-201ENST00000425787 232 ntBASIC1.68□□□□□ -2.14
DDX28Q9NUL7 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.68□□□□□ -2.14
DDX28Q9NUL7 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.68□□□□□ -2.14
DDX28Q9NUL7 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.68□□□□□ -2.14
DDX28Q9NUL7 AC007677.1-201ENST00000445757 515 ntBASIC1.68□□□□□ -2.14
DDX28Q9NUL7 AL357134.1-201ENST00000445848 426 ntBASIC1.68□□□□□ -2.14
DDX28Q9NUL7 AC009237.7-201ENST00000447357 229 ntBASIC1.68□□□□□ -2.14
DDX28Q9NUL7 AC010531.2-201ENST00000465012 153 ntBASIC1.68□□□□□ -2.14
DDX28Q9NUL7 AC067942.3-201ENST00000512025 362 ntBASIC1.68□□□□□ -2.14
DDX28Q9NUL7 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.68□□□□□ -2.14
DDX28Q9NUL7 RNA5SP54-201ENST00000516951 92 ntBASIC1.68□□□□□ -2.14
DDX28Q9NUL7 GNAI2P1-201ENST00000541815 315 ntBASIC1.68□□□□□ -2.14
DDX28Q9NUL7 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.68□□□□□ -2.14
DDX28Q9NUL7 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.68□□□□□ -2.14
DDX28Q9NUL7 AC016727.1-205ENST00000605437 569 ntBASIC1.68□□□□□ -2.14
DDX28Q9NUL7 AC093913.1-201ENST00000614178 329 ntBASIC1.68□□□□□ -2.14
DDX28Q9NUL7 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.68□□□□□ -2.14
DDX28Q9NUL7 AC006504.8-201ENST00000621046 635 ntBASIC1.68□□□□□ -2.14
DDX28Q9NUL7 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.68□□□□□ -2.14
DDX28Q9NUL7 AC022513.1-201ENST00000624512 117 ntBASIC1.68□□□□□ -2.14
DDX28Q9NUL7 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.68□□□□□ -2.14
DDX28Q9NUL7 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
DDX28Q9NUL7 AL159152.1-201ENST00000635019 2587 ntBASIC1.67□□□□□ -2.14
DDX28Q9NUL7 RNU6-997P-201ENST00000384725 107 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms