| MUC1 | P15941 | CYLC1-201 | ENST00000329312 | 2106 nt | APPRIS P3 TSL 1 (best) BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | MIR126-201 | ENST00000362291 | 85 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | RNU6-1164P-201 | ENST00000364428 | 107 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | RNU6-1286P-201 | ENST00000383871 | 107 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | RNU6-968P-201 | ENST00000384076 | 107 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | RNU6-790P-201 | ENST00000384479 | 105 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | RNU6-306P-201 | ENST00000384617 | 107 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | MIR549A-201 | ENST00000385268 | 96 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | RNU6-1093P-201 | ENST00000391194 | 107 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | KRTAP25-1-201 | ENST00000416044 | 370 nt | APPRIS P1 BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC009161.1-201 | ENST00000417306 | 376 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | MTCO3P46-201 | ENST00000425787 | 232 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC133865.1-201 | ENST00000438619 | 339 nt | TSL 3 BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | HMGN2P18-201 | ENST00000450680 | 270 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | FGF7P6-202 | ENST00000451282 | 293 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | PCMTD1P1-201 | ENST00000455560 | 355 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | SNORD13-201 | ENST00000459299 | 104 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AF186996.7-201 | ENST00000492781 | 209 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC010420.1-201 | ENST00000515077 | 509 nt | TSL 3 BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | RNU6-358P-201 | ENST00000516564 | 75 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | DEFB131C-201 | ENST00000528817 | 165 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC011092.2-201 | ENST00000533659 | 586 nt | TSL 1 (best) BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | LINC02442-201 | ENST00000537732 | 343 nt | TSL 3 BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC099518.4-202 | ENST00000576433 | 455 nt | TSL 2 BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | FGF7P1-201 | ENST00000582820 | 288 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC018638.8-201 | ENST00000588755 | 281 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AP000654.2-201 | ENST00000605633 | 586 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC025754.2-201 | ENST00000606491 | 432 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | DLEU2_5.1-201 | ENST00000615567 | 84 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC009248.2-201 | ENST00000619826 | 254 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AL133216.2-202 | ENST00000634512 | 349 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| MUC1 | P15941 | ZBED5-202 | ENST00000432999 | 2741 nt | APPRIS P1 TSL 1 (best) BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | C1orf141-205 | ENST00000475209 | 2079 nt | APPRIS ALT2 TSL 5 BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | SNORD14D-201 | ENST00000384390 | 87 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | MIR487A-201 | ENST00000385009 | 80 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | TRAJ34-201 | ENST00000390503 | 58 nt | APPRIS P1 BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | SNORA12.2-201 | ENST00000391040 | 156 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | SNORA67.6-201 | ENST00000391093 | 99 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | MIR1283-2-201 | ENST00000408621 | 87 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | RNU6ATAC25P-201 | ENST00000408798 | 117 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | RNA5SP494-201 | ENST00000410653 | 129 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | RNA5SP450-201 | ENST00000411206 | 102 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | SRIP3-201 | ENST00000413200 | 219 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC244636.1-201 | ENST00000421152 | 228 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC096920.1-201 | ENST00000423991 | 241 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | FTH1P25-201 | ENST00000447665 | 469 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC008154.1-201 | ENST00000453087 | 327 nt | TSL 3 BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC079354.2-201 | ENST00000453523 | 154 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | RNU6-329P-201 | ENST00000459618 | 107 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC063944.1-201 | ENST00000496943 | 295 nt | TSL 3 BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | MTCO2P30-201 | ENST00000503662 | 364 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | RNU6-567P-201 | ENST00000516746 | 107 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | RNU6-1098P-201 | ENST00000516772 | 96 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | RNU6-566P-201 | ENST00000516790 | 107 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | RNA5SP454-201 | ENST00000517231 | 127 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC114550.2-201 | ENST00000524008 | 397 nt | TSL 3 BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC016256.1-201 | ENST00000547971 | 354 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AL160236.1-201 | ENST00000556317 | 195 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC011939.2-201 | ENST00000567396 | 428 nt | TSL 3 BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC090517.1-201 | ENST00000569307 | 266 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | SNORA59B-202 | ENST00000578183 | 701 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | DLGAP1-AS4-201 | ENST00000582054 | 757 nt | TSL 5 BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC019193.3-201 | ENST00000609144 | 554 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | U6atac.1-201 | ENST00000616025 | 117 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | MUC15-202 | ENST00000436318 | 3118 nt | TSL 5 BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | CENPQ-201 | ENST00000335783 | 1733 nt | APPRIS P1 TSL 1 (best) BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | UHRF1BP1L-203 | ENST00000545232 | 4088 nt | TSL 1 (best) BASIC | 1.29 | □□□□□ -2.2 | | |
| MUC1 | P15941 | RNU1-17P-201 | ENST00000363022 | 152 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | SNORD114-6-201 | ENST00000364393 | 72 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | Y_RNA.248-201 | ENST00000364501 | 109 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | MIR764-201 | ENST00000390811 | 85 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AL356776.1-201 | ENST00000406574 | 447 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | SNRPG-202 | ENST00000413456 | 398 nt | TSL 3 BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | FO680682.1-201 | ENST00000421261 | 345 nt | TSL 3 BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AL132875.2-201 | ENST00000436418 | 325 nt | TSL 5 BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | MTND4LP16-201 | ENST00000440828 | 295 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AL353572.1-201 | ENST00000442490 | 417 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | SNRPG-205 | ENST00000449935 | 428 nt | TSL 1 (best) BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | LINC01077-201 | ENST00000452288 | 413 nt | TSL 3 BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC025918.1-201 | ENST00000452467 | 383 nt | TSL 3 BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | TOMM22P6-201 | ENST00000465035 | 409 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC023790.1-201 | ENST00000482174 | 347 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC132942.1-201 | ENST00000486753 | 483 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | RPL23AP75-201 | ENST00000491601 | 451 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | Y_RNA.675-201 | ENST00000516389 | 149 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | RNA5SP490-201 | ENST00000517141 | 136 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | SNORA31.24-201 | ENST00000517232 | 57 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC023200.1-201 | ENST00000519660 | 651 nt | TSL 3 BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AP003171.1-201 | ENST00000532770 | 266 nt | TSL 2 BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | MIR4524B-201 | ENST00000581569 | 115 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | POLR3GP2-201 | ENST00000588366 | 668 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC060780.3-201 | ENST00000589464 | 80 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | B3GNTL1P2-201 | ENST00000603673 | 288 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC016727.2-201 | ENST00000603988 | 621 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | BNIP3P10-201 | ENST00000605360 | 577 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC124303.1-201 | ENST00000605703 | 360 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC122108.2-201 | ENST00000611946 | 526 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC093913.1-201 | ENST00000614178 | 329 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | AC233981.2-201 | ENST00000611524 | 1614 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| MUC1 | P15941 | MTND4P5-201 | ENST00000435821 | 1374 nt | BASIC | 1.27 | □□□□□ -2.21 | | |