Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 AC022432.1-201ENST00000595739 310 ntBASIC0.6□□□□□ -2.31
LIMS3P0CW19 AC022217.4-201ENST00000604389 163 ntBASIC0.6□□□□□ -2.31
LIMS3P0CW19 RNU6-85P-201ENST00000605989 107 ntBASIC0.6□□□□□ -2.31
LIMS3P0CW19 MIR98-201ENST00000606724 119 ntBASIC0.6□□□□□ -2.31
LIMS3P0CW19 MIR8054-201ENST00000620877 86 ntBASIC0.6□□□□□ -2.31
LIMS3P0CW19 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC0.59□□□□□ -2.31
LIMS3P0CW19 RNU6-1305P-201ENST00000364353 104 ntBASIC0.59□□□□□ -2.31
LIMS3P0CW19 RNU4-76P-201ENST00000364509 141 ntBASIC0.59□□□□□ -2.31
LIMS3P0CW19 Y_RNA.327-201ENST00000365201 102 ntBASIC0.59□□□□□ -2.31
LIMS3P0CW19 SNORA80D-201ENST00000384488 135 ntBASIC0.59□□□□□ -2.31
LIMS3P0CW19 AL034345.1-201ENST00000407768 123 ntBASIC0.59□□□□□ -2.31
LIMS3P0CW19 RNU6-57P-201ENST00000411348 103 ntBASIC0.59□□□□□ -2.31
LIMS3P0CW19 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC0.59□□□□□ -2.31
LIMS3P0CW19 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC0.59□□□□□ -2.31
LIMS3P0CW19 AC008134.1-201ENST00000420943 193 ntBASIC0.59□□□□□ -2.31
LIMS3P0CW19 Z99497.1-201ENST00000421282 135 ntBASIC0.59□□□□□ -2.31
LIMS3P0CW19 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC0.59□□□□□ -2.31
LIMS3P0CW19 AC009961.2-201ENST00000435771 251 ntBASIC0.59□□□□□ -2.31
LIMS3P0CW19 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC0.59□□□□□ -2.31
LIMS3P0CW19 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC0.59□□□□□ -2.31
LIMS3P0CW19 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.59□□□□□ -2.31
LIMS3P0CW19 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC0.59□□□□□ -2.31
LIMS3P0CW19 RNU7-57P-201ENST00000459540 60 ntBASIC0.59□□□□□ -2.31
LIMS3P0CW19 AC117454.1-201ENST00000491120 168 ntBASIC0.59□□□□□ -2.31
LIMS3P0CW19 AC010493.1-201ENST00000513479 292 ntBASIC0.59□□□□□ -2.31
LIMS3P0CW19 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.59□□□□□ -2.31
LIMS3P0CW19 AP000907.4-201ENST00000604143 237 ntBASIC0.59□□□□□ -2.31
LIMS3P0CW19 Z84480.1-201ENST00000605131 311 ntBASIC0.59□□□□□ -2.31
LIMS3P0CW19 AC097065.2-201ENST00000608159 533 ntBASIC0.59□□□□□ -2.31
LIMS3P0CW19 AC108706.1-201ENST00000611053 297 ntBASIC0.59□□□□□ -2.31
LIMS3P0CW19 AC106754.2-201ENST00000623006 233 ntBASIC0.59□□□□□ -2.31
LIMS3P0CW19 AL603839.4-201ENST00000624658 1005 ntBASIC0.59□□□□□ -2.31
LIMS3P0CW19 MTND4P5-201ENST00000435821 1374 ntBASIC0.58□□□□□ -2.32
LIMS3P0CW19 AF228730.1-201ENST00000397972 663 ntBASIC0.58□□□□□ -2.32
LIMS3P0CW19 MIR942-201ENST00000401111 86 ntBASIC0.58□□□□□ -2.32
LIMS3P0CW19 RNU6-195P-201ENST00000411352 109 ntBASIC0.58□□□□□ -2.32
LIMS3P0CW19 AC004941.2-201ENST00000427009 228 ntBASIC0.58□□□□□ -2.32
LIMS3P0CW19 AC245047.3-201ENST00000429428 127 ntBASIC0.58□□□□□ -2.32
LIMS3P0CW19 RNU7-167P-201ENST00000459160 62 ntBASIC0.58□□□□□ -2.32
LIMS3P0CW19 RN7SKP265-201ENST00000516448 223 ntBASIC0.58□□□□□ -2.32
LIMS3P0CW19 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC0.58□□□□□ -2.32
LIMS3P0CW19 AC068790.2-201ENST00000602601 557 ntBASIC0.58□□□□□ -2.32
LIMS3P0CW19 AC004223.4-201ENST00000612426 332 ntBASIC0.58□□□□□ -2.32
LIMS3P0CW19 AC068792.1-201ENST00000621354 417 ntBASIC0.58□□□□□ -2.32
LIMS3P0CW19 AC005858.4-201ENST00000623191 700 ntBASIC0.58□□□□□ -2.32
LIMS3P0CW19 U6.108-201ENST00000637764 58 ntBASIC0.58□□□□□ -2.32
LIMS3P0CW19 AC068700.1-201ENST00000565862 3754 ntBASIC0.58□□□□□ -2.32
LIMS3P0CW19 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.57□□□□□ -2.32
LIMS3P0CW19 RNU6-227P-201ENST00000362865 103 ntBASIC0.57□□□□□ -2.32
LIMS3P0CW19 RNA5SP99-201ENST00000364020 114 ntBASIC0.57□□□□□ -2.32
LIMS3P0CW19 Y_RNA.363-201ENST00000365529 113 ntBASIC0.57□□□□□ -2.32
LIMS3P0CW19 MIR660-201ENST00000385235 97 ntBASIC0.57□□□□□ -2.32
LIMS3P0CW19 RNU6-440P-201ENST00000390882 105 ntBASIC0.57□□□□□ -2.32
LIMS3P0CW19 MRPL42P3-201ENST00000401492 326 ntBASIC0.57□□□□□ -2.32
LIMS3P0CW19 AC016909.1-201ENST00000415916 166 ntBASIC0.57□□□□□ -2.32
LIMS3P0CW19 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC0.57□□□□□ -2.32
LIMS3P0CW19 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC0.57□□□□□ -2.32
LIMS3P0CW19 RPL31P35-201ENST00000431058 377 ntBASIC0.57□□□□□ -2.32
LIMS3P0CW19 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC0.57□□□□□ -2.32
LIMS3P0CW19 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC0.57□□□□□ -2.32
LIMS3P0CW19 MTCO3P8-201ENST00000453691 755 ntBASIC0.57□□□□□ -2.32
LIMS3P0CW19 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.57□□□□□ -2.32
LIMS3P0CW19 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC0.57□□□□□ -2.32
LIMS3P0CW19 RNU6-612P-201ENST00000516909 102 ntBASIC0.57□□□□□ -2.32
LIMS3P0CW19 RNU6-323P-201ENST00000521915 107 ntBASIC0.57□□□□□ -2.32
LIMS3P0CW19 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
LIMS3P0CW19 AC007834.2-201ENST00000536310 343 ntBASIC0.57□□□□□ -2.32
LIMS3P0CW19 AC004817.2-201ENST00000561794 651 ntBASIC0.57□□□□□ -2.32
LIMS3P0CW19 MIR548AB-201ENST00000584917 84 ntBASIC0.57□□□□□ -2.32
LIMS3P0CW19 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.57□□□□□ -2.32
LIMS3P0CW19 BNIP3P39-201ENST00000601077 554 ntBASIC0.57□□□□□ -2.32
LIMS3P0CW19 AP000942.3-201ENST00000603702 160 ntBASIC0.57□□□□□ -2.32
LIMS3P0CW19 SNRPGP20-201ENST00000604477 205 ntBASIC0.57□□□□□ -2.32
LIMS3P0CW19 AC073349.3-201ENST00000617616 186 ntBASIC0.57□□□□□ -2.32
LIMS3P0CW19 snoZ196.1-201ENST00000625269 89 ntBASIC0.57□□□□□ -2.32
LIMS3P0CW19 RNA5SP361-201ENST00000362686 118 ntBASIC0.56□□□□□ -2.32
LIMS3P0CW19 RNU5B-2P-201ENST00000363036 113 ntBASIC0.56□□□□□ -2.32
LIMS3P0CW19 RNU6-1214P-201ENST00000363650 109 ntBASIC0.56□□□□□ -2.32
LIMS3P0CW19 SNORD114-27-201ENST00000363766 70 ntBASIC0.56□□□□□ -2.32
LIMS3P0CW19 RNU6-1240P-201ENST00000365155 104 ntBASIC0.56□□□□□ -2.32
LIMS3P0CW19 RNU6-969P-201ENST00000383900 105 ntBASIC0.56□□□□□ -2.32
LIMS3P0CW19 RNU6-925P-201ENST00000384629 104 ntBASIC0.56□□□□□ -2.32
LIMS3P0CW19 MIR653-201ENST00000385279 96 ntBASIC0.56□□□□□ -2.32
LIMS3P0CW19 RNU2-29P-201ENST00000410423 189 ntBASIC0.56□□□□□ -2.32
LIMS3P0CW19 RNA5SP494-201ENST00000410653 129 ntBASIC0.56□□□□□ -2.32
LIMS3P0CW19 AC004866.1-201ENST00000411748 78 ntBASIC0.56□□□□□ -2.32
LIMS3P0CW19 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.56□□□□□ -2.32
LIMS3P0CW19 MTCO3P18-201ENST00000440206 761 ntBASIC0.56□□□□□ -2.32
LIMS3P0CW19 AC244505.5-201ENST00000443639 207 ntBASIC0.56□□□□□ -2.32
LIMS3P0CW19 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
LIMS3P0CW19 HMGB1P29-201ENST00000505659 499 ntBASIC0.56□□□□□ -2.32
LIMS3P0CW19 AC105417.1-201ENST00000514691 285 ntBASIC0.56□□□□□ -2.32
LIMS3P0CW19 RNU6-113P-201ENST00000516653 101 ntBASIC0.56□□□□□ -2.32
LIMS3P0CW19 AC025647.1-201ENST00000517879 253 ntBASIC0.56□□□□□ -2.32
LIMS3P0CW19 APOOP3-201ENST00000536787 586 ntBASIC0.56□□□□□ -2.32
LIMS3P0CW19 AC004584.2-201ENST00000570407 410 ntBASIC0.56□□□□□ -2.32
LIMS3P0CW19 AL162424.1-201ENST00000602325 221 ntBASIC0.56□□□□□ -2.32
LIMS3P0CW19 U2.17-201ENST00000611454 95 ntBASIC0.56□□□□□ -2.32
LIMS3P0CW19 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.56□□□□□ -2.32
LIMS3P0CW19 AC022306.3-201ENST00000619930 550 ntBASIC0.56□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 210.1 ms