Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC026371.1-201ENST00000551867 419 ntBASIC-0.22□□□□□ -2.45
USF3Q68DE3 MIR548AX-201ENST00000580117 73 ntBASIC-0.22□□□□□ -2.45
USF3Q68DE3 DPPA3P3-201ENST00000603842 430 ntBASIC-0.22□□□□□ -2.45
USF3Q68DE3 AC103706.2-201ENST00000638080 240 ntBASIC-0.22□□□□□ -2.45
USF3Q68DE3 SMIM11P1-201ENST00000369586 178 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 SNORA12.1-201ENST00000390873 148 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 SNORD111-201ENST00000408139 94 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 RNU6-177P-201ENST00000411257 104 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 AC010154.1-201ENST00000425857 269 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC-0.23□□□□□ -2.45
USF3Q68DE3 RPS23P5-201ENST00000495419 428 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 SNORA25.12-201ENST00000516202 82 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 AC024995.1-201ENST00000523014 93 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 AF235103.2-201ENST00000525753 346 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 AC004832.4-201ENST00000608952 331 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 AC104073.3-201ENST00000610942 955 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC-0.23□□□□□ -2.45
USF3Q68DE3 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC-0.23□□□□□ -2.45
USF3Q68DE3 RNU6-212P-201ENST00000362642 104 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 RNU6-331P-201ENST00000384724 107 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 MIR520G-201ENST00000385064 90 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 MIR520H-201ENST00000385126 88 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 RNU6-278P-201ENST00000390945 109 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC-0.23□□□□□ -2.45
USF3Q68DE3 AC104563.1-201ENST00000476147 376 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 AC010469.2-201ENST00000496412 480 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC-0.23□□□□□ -2.45
USF3Q68DE3 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC-0.23□□□□□ -2.45
USF3Q68DE3 AP001189.2-201ENST00000527320 189 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 SUB1P2-201ENST00000556401 297 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 AC090517.1-201ENST00000569307 266 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 MIR3678-201ENST00000578455 94 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 AC022217.4-201ENST00000604389 163 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC-0.23□□□□□ -2.45
USF3Q68DE3 MIR1295B-201ENST00000636144 60 ntBASIC-0.23□□□□□ -2.45
USF3Q68DE3 SNORD56.1-201ENST00000362913 68 ntBASIC-0.24□□□□□ -2.45
USF3Q68DE3 RNU5E-7P-201ENST00000365290 117 ntBASIC-0.24□□□□□ -2.45
USF3Q68DE3 RNU6-929P-201ENST00000384429 107 ntBASIC-0.24□□□□□ -2.45
USF3Q68DE3 MTCYBP2-201ENST00000407745 171 ntBASIC-0.24□□□□□ -2.45
USF3Q68DE3 MIR1827-201ENST00000408549 66 ntBASIC-0.24□□□□□ -2.45
USF3Q68DE3 AL162725.1-201ENST00000435405 301 ntBASIC-0.24□□□□□ -2.45
USF3Q68DE3 NFU1P2-201ENST00000448700 469 ntBASIC-0.24□□□□□ -2.45
USF3Q68DE3 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC-0.24□□□□□ -2.45
USF3Q68DE3 RNU7-159P-201ENST00000459284 62 ntBASIC-0.24□□□□□ -2.45
USF3Q68DE3 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC-0.24□□□□□ -2.45
USF3Q68DE3 RNU1-86P-201ENST00000516108 154 ntBASIC-0.24□□□□□ -2.45
USF3Q68DE3 RNU1-107P-201ENST00000516617 154 ntBASIC-0.24□□□□□ -2.45
USF3Q68DE3 ZNF321P-202ENST00000550843 495 ntBASIC-0.24□□□□□ -2.45
USF3Q68DE3 AC112693.2-201ENST00000556538 232 ntBASIC-0.24□□□□□ -2.45
USF3Q68DE3 AL031667.3-201ENST00000620124 655 ntBASIC-0.24□□□□□ -2.45
USF3Q68DE3 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC-0.24□□□□□ -2.45
USF3Q68DE3 AC011155.2-201ENST00000623202 216 ntBASIC-0.24□□□□□ -2.45
USF3Q68DE3 BX322639.1-202ENST00000423987 2213 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 Y_RNA.33-201ENST00000362591 102 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 RNU6-78P-201ENST00000362897 107 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 SNORD115-48-201ENST00000364764 76 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 SNORA40.8-201ENST00000411034 126 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 AC027644.1-201ENST00000419595 298 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 MTND4LP11-201ENST00000422184 280 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 ZFAND6P1-201ENST00000434138 605 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC-0.25□□□□□ -2.45
USF3Q68DE3 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC-0.25□□□□□ -2.45
USF3Q68DE3 snoU13.11-201ENST00000459219 104 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 SNORD126-201ENST00000459475 77 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC-0.25□□□□□ -2.45
USF3Q68DE3 RNU6-1041P-201ENST00000516254 102 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 RNU6-1110P-201ENST00000516462 101 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 Y_RNA.687-201ENST00000516558 91 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 RNU6-1096P-201ENST00000517089 102 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 AL390123.1-201ENST00000603216 237 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 AC231657.1-201ENST00000624313 397 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC-0.25□□□□□ -2.45
USF3Q68DE3 RNU6-481P-201ENST00000384194 107 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 RNA5SP266-201ENST00000410273 108 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC-0.25□□□□□ -2.45
USF3Q68DE3 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC-0.25□□□□□ -2.45
USF3Q68DE3 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC-0.25□□□□□ -2.45
USF3Q68DE3 RNU6-856P-201ENST00000516959 98 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC-0.25□□□□□ -2.45
USF3Q68DE3 AC027419.1-201ENST00000522976 328 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 IGKV1-22-201ENST00000524313 326 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 MTCO3P15-201ENST00000526563 574 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC-0.25□□□□□ -2.45
USF3Q68DE3 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC-0.25□□□□□ -2.45
USF3Q68DE3 AC004584.2-201ENST00000570407 410 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 AL592221.1-201ENST00000605266 382 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 AC064807.4-201ENST00000607201 407 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 MIR15A-201ENST00000607334 83 ntBASIC-0.25□□□□□ -2.45
USF3Q68DE3 RNU6-1285P-201ENST00000363480 105 ntBASIC-0.26□□□□□ -2.45
USF3Q68DE3 RNU6-1122P-201ENST00000384449 107 ntBASIC-0.26□□□□□ -2.45
USF3Q68DE3 SNORD65.1-201ENST00000390889 71 ntBASIC-0.26□□□□□ -2.45
USF3Q68DE3 MIR1283-1-201ENST00000408494 87 ntBASIC-0.26□□□□□ -2.45
USF3Q68DE3 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC-0.26□□□□□ -2.45
USF3Q68DE3 EEF1A1P39-201ENST00000440791 250 ntBASIC-0.26□□□□□ -2.45
USF3Q68DE3 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC-0.26□□□□□ -2.45
USF3Q68DE3 AC006026.2-201ENST00000457376 180 ntBASIC-0.26□□□□□ -2.45
USF3Q68DE3 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC-0.26□□□□□ -2.45
USF3Q68DE3 MIR3923-201ENST00000579521 83 ntBASIC-0.26□□□□□ -2.45
USF3Q68DE3 MIR8076-201ENST00000611401 83 ntBASIC-0.26□□□□□ -2.45
USF3Q68DE3 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC-0.26□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms