Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SNORA48.11-201ENST00000517015 89 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC2.02□□□□□ -2.09
NKX3-1Q99801 AC016256.1-201ENST00000547971 354 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.02□□□□□ -2.09
NKX3-1Q99801 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.02□□□□□ -2.09
NKX3-1Q99801 AC007336.1-201ENST00000576365 3828 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 MIR5690-201ENST00000583739 73 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 AC067747.1-201ENST00000608026 250 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 AC022202.1-201ENST00000613515 211 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 AC005520.5-201ENST00000613926 164 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 AC008121.3-201ENST00000618726 433 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 AC104985.2-201ENST00000620598 500 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 MIR1248-201ENST00000629190 106 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 ZNF299P-201ENST00000406845 1804 ntBASIC2.02□□□□□ -2.09
NKX3-1Q99801 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.02□□□□□ -2.09
NKX3-1Q99801 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.01□□□□□ -2.09
NKX3-1Q99801 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.01□□□□□ -2.09
NKX3-1Q99801 RNU6-743P-201ENST00000364151 106 ntBASIC2.01□□□□□ -2.09
NKX3-1Q99801 SNORA25B-201ENST00000365507 128 ntBASIC2.01□□□□□ -2.09
NKX3-1Q99801 RNU6-890P-201ENST00000384121 107 ntBASIC2.01□□□□□ -2.09
NKX3-1Q99801 RNY4P36-201ENST00000391116 96 ntBASIC2.01□□□□□ -2.09
NKX3-1Q99801 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC2.01□□□□□ -2.09
NKX3-1Q99801 WARS2P1-201ENST00000429678 537 ntBASIC2.01□□□□□ -2.09
NKX3-1Q99801 AL445305.1-201ENST00000432577 575 ntBASIC2.01□□□□□ -2.09
NKX3-1Q99801 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC2.01□□□□□ -2.09
NKX3-1Q99801 SNORD19B-201ENST00000459623 84 ntBASIC2.01□□□□□ -2.09
NKX3-1Q99801 TOMM22P6-201ENST00000465035 409 ntBASIC2.01□□□□□ -2.09
NKX3-1Q99801 RNU6-567P-201ENST00000516746 107 ntBASIC2.01□□□□□ -2.09
NKX3-1Q99801 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.01□□□□□ -2.09
NKX3-1Q99801 DEFB131C-201ENST00000528817 165 ntBASIC2.01□□□□□ -2.09
NKX3-1Q99801 EIF4A1P12-201ENST00000551910 141 ntBASIC2.01□□□□□ -2.09
NKX3-1Q99801 MIR4298-201ENST00000584380 73 ntBASIC2.01□□□□□ -2.09
NKX3-1Q99801 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
NKX3-1Q99801 AC016727.2-201ENST00000603988 621 ntBASIC2.01□□□□□ -2.09
NKX3-1Q99801 SCARNA4-201ENST00000629045 128 ntBASIC2.01□□□□□ -2.09
NKX3-1Q99801 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
NKX3-1Q99801 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
NKX3-1Q99801 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
NKX3-1Q99801 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
NKX3-1Q99801 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2□□□□□ -2.09
NKX3-1Q99801 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
NKX3-1Q99801 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC2□□□□□ -2.09
NKX3-1Q99801 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2□□□□□ -2.09
NKX3-1Q99801 RNU6-874P-201ENST00000362390 105 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 RNY1P16-201ENST00000363063 111 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 U3.9-201ENST00000363823 204 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 RNU4-9P-201ENST00000364951 139 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 RNA5SP240-201ENST00000365355 128 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 RNU6-546P-201ENST00000383991 107 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 Y_RNA.419-201ENST00000384041 102 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 MT-TD-201ENST00000387419 68 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 SNORA12.2-201ENST00000391040 156 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 MTCYBP4-201ENST00000401524 249 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2□□□□□ -2.09
NKX3-1Q99801 AF228730.4-201ENST00000421457 183 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 AL590556.1-201ENST00000423231 483 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 IPO7P1-201ENST00000442031 636 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 AL139109.1-201ENST00000455491 297 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2□□□□□ -2.09
NKX3-1Q99801 snoU13.30-201ENST00000458951 104 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 Y_RNA.653-201ENST00000459091 95 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 AC107032.1-201ENST00000485945 480 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 KRTAP13-6P-201ENST00000508999 371 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 AL590705.4-201ENST00000532209 134 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 AC021269.2-201ENST00000532318 330 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2□□□□□ -2.09
NKX3-1Q99801 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2□□□□□ -2.09
NKX3-1Q99801 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2□□□□□ -2.09
NKX3-1Q99801 MIR5701-3-201ENST00000578890 82 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 MIR5701-1-201ENST00000585138 82 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 AC013412.1-201ENST00000610687 192 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 MIR6895-201ENST00000613497 78 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 MIR5701-2-201ENST00000615634 82 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 AL132822.1-201ENST00000617063 513 ntBASIC2□□□□□ -2.09
NKX3-1Q99801 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
NKX3-1Q99801 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2□□□□□ -2.09
NKX3-1Q99801 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
NKX3-1Q99801 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
NKX3-1Q99801 RNU1-148P-201ENST00000384472 162 ntBASIC1.99□□□□□ -2.09
NKX3-1Q99801 MIR561-201ENST00000385216 97 ntBASIC1.99□□□□□ -2.09
NKX3-1Q99801 AL359511.1-201ENST00000402970 211 ntBASIC1.99□□□□□ -2.09
NKX3-1Q99801 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.99□□□□□ -2.09
NKX3-1Q99801 AC009963.1-201ENST00000417265 157 ntBASIC1.99□□□□□ -2.09
NKX3-1Q99801 RPL23AP50-201ENST00000434149 455 ntBASIC1.99□□□□□ -2.09
NKX3-1Q99801 OR2AQ1P-201ENST00000451972 200 ntBASIC1.99□□□□□ -2.09
NKX3-1Q99801 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.99□□□□□ -2.09
NKX3-1Q99801 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.99□□□□□ -2.09
NKX3-1Q99801 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.99□□□□□ -2.09
NKX3-1Q99801 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.99□□□□□ -2.09
NKX3-1Q99801 SNORA4.4-201ENST00000515921 135 ntBASIC1.99□□□□□ -2.09
NKX3-1Q99801 RNU6-667P-201ENST00000517186 102 ntBASIC1.99□□□□□ -2.09
NKX3-1Q99801 AC233702.2-202ENST00000562547 291 ntBASIC1.99□□□□□ -2.09
NKX3-1Q99801 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.99□□□□□ -2.09
NKX3-1Q99801 AL355802.3-201ENST00000607571 545 ntBASIC1.99□□□□□ -2.09
NKX3-1Q99801 MIR1291-201ENST00000627649 87 ntBASIC1.99□□□□□ -2.09
NKX3-1Q99801 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
NKX3-1Q99801 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
NKX3-1Q99801 Y_RNA.61-201ENST00000362835 102 ntBASIC1.98□□□□□ -2.09
NKX3-1Q99801 RNU6-99P-201ENST00000364721 107 ntBASIC1.98□□□□□ -2.09
NKX3-1Q99801 RNU1-91P-201ENST00000364746 163 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 146.2 ms