Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 MIR4709-201ENST00000577272 72 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 MIR548AC-201ENST00000585049 88 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 AC007742.2-201ENST00000618226 398 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 AC243829.3-201ENST00000622177 108 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 Z69720.2-201ENST00000624755 279 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 RNA5SP457-201ENST00000363657 124 ntBASIC0.44□□□□□ -2.34
SCN3AQ9NY46 RNU6-1200P-201ENST00000384162 107 ntBASIC0.44□□□□□ -2.34
SCN3AQ9NY46 RNU6-607P-201ENST00000411283 108 ntBASIC0.44□□□□□ -2.34
SCN3AQ9NY46 MTCO2P21-201ENST00000419780 677 ntBASIC0.44□□□□□ -2.34
SCN3AQ9NY46 RPS27AP14-201ENST00000422868 454 ntBASIC0.44□□□□□ -2.34
SCN3AQ9NY46 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.44□□□□□ -2.34
SCN3AQ9NY46 AC078809.1-201ENST00000427601 140 ntBASIC0.44□□□□□ -2.34
SCN3AQ9NY46 RPL37P21-201ENST00000435890 276 ntBASIC0.44□□□□□ -2.34
SCN3AQ9NY46 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC0.44□□□□□ -2.34
SCN3AQ9NY46 AC117522.1-201ENST00000509821 380 ntBASIC0.44□□□□□ -2.34
SCN3AQ9NY46 AC067942.3-201ENST00000512025 362 ntBASIC0.44□□□□□ -2.34
SCN3AQ9NY46 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC0.44□□□□□ -2.34
SCN3AQ9NY46 RMST_7.1-201ENST00000621935 268 ntBASIC0.44□□□□□ -2.34
SCN3AQ9NY46 SNORD32B-201ENST00000364460 84 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 RNU6-534P-201ENST00000364877 106 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 SNORD99-201ENST00000408612 74 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 AC092809.3-201ENST00000415453 231 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 RPL39P38-201ENST00000467018 153 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 COX6CP6-201ENST00000490840 228 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 AC022447.4-201ENST00000504053 364 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 AC112206.4-201ENST00000515142 405 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 SNORA19.3-201ENST00000516165 130 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 AC109810.1-201ENST00000534066 224 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 AC078795.3-201ENST00000602913 472 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 uc_338.17-201ENST00000619633 179 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.43□□□□□ -2.34
SCN3AQ9NY46 AL354692.1-201ENST00000423044 315 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 AC007283.2-201ENST00000424739 197 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 SNRPEP8-201ENST00000442866 260 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC0.43□□□□□ -2.34
SCN3AQ9NY46 AC145146.1-201ENST00000496370 254 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 MTND3P5-201ENST00000512798 333 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC0.43□□□□□ -2.34
SCN3AQ9NY46 SNORA31.2-201ENST00000516019 134 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC0.43□□□□□ -2.34
SCN3AQ9NY46 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC0.43□□□□□ -2.34
SCN3AQ9NY46 AL121579.1-201ENST00000555129 305 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 MIR4307-201ENST00000582802 84 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 MTCO2P2-201ENST00000591258 225 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 BX284668.6-201ENST00000606899 438 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 AC021506.2-201ENST00000612354 169 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 UGP2-231ENST00000627474 264 ntTSL 5 BASIC0.43□□□□□ -2.34
SCN3AQ9NY46 AC013437.2-201ENST00000639587 677 ntBASIC0.43□□□□□ -2.34
SCN3AQ9NY46 RNU6-1237P-201ENST00000384777 107 ntBASIC0.42□□□□□ -2.34
SCN3AQ9NY46 MIR605-201ENST00000385078 83 ntBASIC0.42□□□□□ -2.34
SCN3AQ9NY46 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.42□□□□□ -2.34
SCN3AQ9NY46 RNU1-119P-201ENST00000391122 165 ntBASIC0.42□□□□□ -2.34
SCN3AQ9NY46 RNU2-64P-201ENST00000411315 191 ntBASIC0.42□□□□□ -2.34
SCN3AQ9NY46 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC0.42□□□□□ -2.34
SCN3AQ9NY46 USP9YP14-201ENST00000430663 563 ntBASIC0.42□□□□□ -2.34
SCN3AQ9NY46 MTND3P1-201ENST00000441336 220 ntBASIC0.42□□□□□ -2.34
SCN3AQ9NY46 MTCO2P7-201ENST00000446518 666 ntBASIC0.42□□□□□ -2.34
SCN3AQ9NY46 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.42□□□□□ -2.34
SCN3AQ9NY46 SRRM1P2-201ENST00000464531 1192 ntBASIC0.42□□□□□ -2.34
SCN3AQ9NY46 AC023050.3-201ENST00000541142 333 ntBASIC0.42□□□□□ -2.34
SCN3AQ9NY46 MIR5697-201ENST00000578045 78 ntBASIC0.42□□□□□ -2.34
SCN3AQ9NY46 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC0.42□□□□□ -2.34
SCN3AQ9NY46 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.42□□□□□ -2.34
SCN3AQ9NY46 AL356157.2-201ENST00000605122 111 ntBASIC0.42□□□□□ -2.34
SCN3AQ9NY46 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC0.42□□□□□ -2.34
SCN3AQ9NY46 RNU6-1123P-201ENST00000362347 106 ntBASIC0.42□□□□□ -2.34
SCN3AQ9NY46 AC063976.4-201ENST00000421971 163 ntBASIC0.42□□□□□ -2.34
SCN3AQ9NY46 AC010099.3-201ENST00000423896 409 ntBASIC0.42□□□□□ -2.34
SCN3AQ9NY46 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC0.42□□□□□ -2.34
SCN3AQ9NY46 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0.42□□□□□ -2.34
SCN3AQ9NY46 RNA5SP168-201ENST00000516642 112 ntBASIC0.42□□□□□ -2.34
SCN3AQ9NY46 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC0.42□□□□□ -2.34
SCN3AQ9NY46 AP002453.2-201ENST00000533503 320 ntBASIC0.42□□□□□ -2.34
SCN3AQ9NY46 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.42□□□□□ -2.34
SCN3AQ9NY46 AL513534.2-201ENST00000603836 250 ntBASIC0.42□□□□□ -2.34
SCN3AQ9NY46 AC097372.5-201ENST00000623665 376 ntBASIC0.42□□□□□ -2.34
SCN3AQ9NY46 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.41□□□□□ -2.34
SCN3AQ9NY46 RNU6-641P-201ENST00000384006 107 ntBASIC0.41□□□□□ -2.34
SCN3AQ9NY46 MIR548B-201ENST00000385247 97 ntBASIC0.41□□□□□ -2.34
SCN3AQ9NY46 AC114482.1-201ENST00000418010 247 ntBASIC0.41□□□□□ -2.34
SCN3AQ9NY46 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC0.41□□□□□ -2.34
SCN3AQ9NY46 RNU6-377P-201ENST00000515965 102 ntBASIC0.41□□□□□ -2.34
SCN3AQ9NY46 AC091489.2-201ENST00000566263 604 ntBASIC0.41□□□□□ -2.34
SCN3AQ9NY46 AC008088.1-201ENST00000580993 280 ntBASIC0.41□□□□□ -2.34
SCN3AQ9NY46 AC005771.1-201ENST00000585581 349 ntBASIC0.41□□□□□ -2.34
SCN3AQ9NY46 AC110760.3-201ENST00000598794 467 ntBASIC0.41□□□□□ -2.34
SCN3AQ9NY46 BCRP9-201ENST00000605312 388 ntBASIC0.41□□□□□ -2.34
SCN3AQ9NY46 AP000484.1-201ENST00000620067 1252 ntBASIC0.41□□□□□ -2.34
SCN3AQ9NY46 SNORD56.2-201ENST00000363242 71 ntBASIC0.4□□□□□ -2.34
SCN3AQ9NY46 Y_RNA.115-201ENST00000363272 98 ntBASIC0.4□□□□□ -2.34
SCN3AQ9NY46 AL606517.2-201ENST00000442855 241 ntBASIC0.4□□□□□ -2.34
SCN3AQ9NY46 AL157398.1-201ENST00000452981 186 ntBASIC0.4□□□□□ -2.34
SCN3AQ9NY46 ZNF736P4Y-201ENST00000454995 1243 ntBASIC0.4□□□□□ -2.34
SCN3AQ9NY46 RNU7-34P-201ENST00000459394 64 ntBASIC0.4□□□□□ -2.34
SCN3AQ9NY46 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.4□□□□□ -2.34
SCN3AQ9NY46 AK3P2-201ENST00000507976 429 ntBASIC0.4□□□□□ -2.34
SCN3AQ9NY46 RNU6-1098P-201ENST00000516772 96 ntBASIC0.4□□□□□ -2.34
SCN3AQ9NY46 RNU6-856P-201ENST00000516959 98 ntBASIC0.4□□□□□ -2.34
SCN3AQ9NY46 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.4□□□□□ -2.34
SCN3AQ9NY46 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC0.4□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 213 ms