Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 RNU6-567P-201ENST00000516746 107 ntBASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 RNU2-44P-201ENST00000516795 194 ntBASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 CPDP1-201ENST00000579660 283 ntBASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 AL133215.3-201ENST00000609801 448 ntBASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 AC007014.2-201ENST00000615581 479 ntBASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 AL359314.1-201ENST00000616913 261 ntBASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
EXOSC3Q9NQT5 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 RNU6-562P-201ENST00000362731 107 ntBASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 RNU6-234P-201ENST00000365229 104 ntBASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 RNU6-968P-201ENST00000384076 107 ntBASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 RNU6-831P-201ENST00000384548 107 ntBASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 RNU6-1093P-201ENST00000391194 107 ntBASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 MIR1277-201ENST00000408536 78 ntBASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 RNA5SP450-201ENST00000411206 102 ntBASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 SRIP3-201ENST00000413200 219 ntBASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 ZNF885P-201ENST00000420174 1098 ntBASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 AC096920.1-201ENST00000423991 241 ntBASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 HMGN2P18-201ENST00000450680 270 ntBASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 ATP5EP1-201ENST00000510257 156 ntBASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 RPL23AP94-201ENST00000512518 302 ntBASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 RNU1-41P-201ENST00000516161 162 ntBASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 RNU1-48P-201ENST00000516400 162 ntBASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 RNA5SP490-201ENST00000517141 136 ntBASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 AP005660.1-201ENST00000522972 293 ntBASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 EIF4A1P12-201ENST00000551910 141 ntBASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 SNRPGP19-201ENST00000603826 189 ntBASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 MIR8076-201ENST00000611401 83 ntBASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 AL136221.1-201ENST00000621449 509 ntBASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 AC009033.1-201ENST00000624279 431 ntBASIC1.7□□□□□ -2.14
EXOSC3Q9NQT5 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 RNU6-1159P-201ENST00000362933 107 ntBASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 RNU6-1164P-201ENST00000364428 107 ntBASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 SNORA16.1-201ENST00000364597 132 ntBASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 RNA5SP126-201ENST00000365092 109 ntBASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 MIR597-201ENST00000384968 97 ntBASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 MIR549A-201ENST00000385268 96 ntBASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 RNU2-20P-201ENST00000410425 191 ntBASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 RNA5SP494-201ENST00000410653 129 ntBASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 AC009161.1-201ENST00000417306 376 ntBASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 EIF1P1-201ENST00000421436 341 ntBASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 HMGN2P19-201ENST00000425149 265 ntBASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 AL645568.3-201ENST00000433683 316 ntBASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 NFU1P2-201ENST00000448700 469 ntBASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 AC130509.1-201ENST00000464158 433 ntBASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 AC069439.1-201ENST00000494739 167 ntBASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 AC090517.1-201ENST00000569307 266 ntBASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.69□□□□□ -2.14
EXOSC3Q9NQT5 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 SNORD114-1-201ENST00000362705 72 ntBASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 Y_RNA.135-201ENST00000363439 95 ntBASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 Y_RNA.157-201ENST00000363638 102 ntBASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 RNU6-1286P-201ENST00000383871 107 ntBASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 SNORD116-11-201ENST00000383882 92 ntBASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 RNU6-306P-201ENST00000384617 107 ntBASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 MIR517A-201ENST00000385001 87 ntBASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 RNU11-3P-201ENST00000391111 133 ntBASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 AL357139.1-201ENST00000407792 426 ntBASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 AC245102.2-201ENST00000448956 180 ntBASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 PCMTD1P1-201ENST00000455560 355 ntBASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 RNU6-1098P-201ENST00000516772 96 ntBASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 AC008749.1-201ENST00000597650 306 ntBASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 AC080078.2-201ENST00000603766 501 ntBASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 AC009994.1-201ENST00000606889 253 ntBASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 AC084782.3-201ENST00000612282 578 ntBASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 AL162373.1-201ENST00000620433 407 ntBASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 ZNF702P-202ENST00000434269 1966 ntBASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 AP006437.1-201ENST00000641440 3685 ntBASIC1.68□□□□□ -2.14
EXOSC3Q9NQT5 AC245060.5-201ENST00000610778 3293 ntBASIC1.67□□□□□ -2.14
EXOSC3Q9NQT5 Y_RNA.86-201ENST00000363020 111 ntBASIC1.67□□□□□ -2.14
EXOSC3Q9NQT5 RNU5B-2P-201ENST00000363036 113 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 146.3 ms