Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 Z82188.1-201ENST00000436709 154 ntBASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 RPL21P2-201ENST00000440049 481 ntBASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 RPL39P40-201ENST00000445481 146 ntBASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 AC112492.4-201ENST00000456549 352 ntBASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 AC112771.1-201ENST00000463581 102 ntBASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 HMGB1P35-201ENST00000503360 598 ntBASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 AC093852.1-201ENST00000503587 266 ntBASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 RNU5F-2P-201ENST00000516066 82 ntBASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 HSBP1P1-201ENST00000555205 166 ntBASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 MIR4680-201ENST00000580906 66 ntBASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 AC008739.2-201ENST00000597006 317 ntBASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 AL162730.1-201ENST00000605734 292 ntBASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 AC138305.3-201ENST00000624988 240 ntBASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 SNORD98-201ENST00000636377 67 ntBASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 AC010329.5-201ENST00000623497 2174 ntBASIC3.15□□□□□ -1.9
LIMCH1Q9UPQ0 RNU6-655P-201ENST00000362858 107 ntBASIC3.15□□□□□ -1.91
LIMCH1Q9UPQ0 RNU6-486P-201ENST00000363116 107 ntBASIC3.15□□□□□ -1.91
LIMCH1Q9UPQ0 RNU6-1210P-201ENST00000363775 107 ntBASIC3.15□□□□□ -1.91
LIMCH1Q9UPQ0 MIR32-201ENST00000384965 70 ntBASIC3.15□□□□□ -1.91
LIMCH1Q9UPQ0 Y_RNA.592-201ENST00000410274 109 ntBASIC3.15□□□□□ -1.91
LIMCH1Q9UPQ0 AC114482.1-201ENST00000418010 247 ntBASIC3.15□□□□□ -1.91
LIMCH1Q9UPQ0 Z98742.2-201ENST00000431564 187 ntBASIC3.15□□□□□ -1.91
LIMCH1Q9UPQ0 AL135938.1-201ENST00000443141 297 ntBASIC3.15□□□□□ -1.91
LIMCH1Q9UPQ0 OR2AQ1P-201ENST00000451972 200 ntBASIC3.15□□□□□ -1.91
LIMCH1Q9UPQ0 AL353752.1-201ENST00000454946 260 ntBASIC3.15□□□□□ -1.91
LIMCH1Q9UPQ0 ANXA2P1-201ENST00000505539 926 ntBASIC3.15□□□□□ -1.91
LIMCH1Q9UPQ0 SNORA31.6-201ENST00000516241 130 ntBASIC3.15□□□□□ -1.91
LIMCH1Q9UPQ0 CYP4A27P-201ENST00000567218 190 ntBASIC3.15□□□□□ -1.91
LIMCH1Q9UPQ0 MIR3923-201ENST00000579521 83 ntBASIC3.15□□□□□ -1.91
LIMCH1Q9UPQ0 AL137843.1-201ENST00000605078 385 ntBASIC3.15□□□□□ -1.91
LIMCH1Q9UPQ0 SNORD58B-201ENST00000607313 66 ntBASIC3.15□□□□□ -1.91
LIMCH1Q9UPQ0 U2.1-201ENST00000618978 145 ntBASIC3.15□□□□□ -1.91
LIMCH1Q9UPQ0 AC002064.3-201ENST00000623448 346 ntBASIC3.15□□□□□ -1.91
LIMCH1Q9UPQ0 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3.15□□□□□ -1.91
LIMCH1Q9UPQ0 Z75746.1-201ENST00000440243 2080 ntBASIC3.15□□□□□ -1.91
LIMCH1Q9UPQ0 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
LIMCH1Q9UPQ0 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
LIMCH1Q9UPQ0 SNORD14.1-201ENST00000365609 90 ntBASIC3.14□□□□□ -1.91
LIMCH1Q9UPQ0 MIR628-201ENST00000385229 95 ntBASIC3.14□□□□□ -1.91
LIMCH1Q9UPQ0 RNU6-101P-201ENST00000410323 104 ntBASIC3.14□□□□□ -1.91
LIMCH1Q9UPQ0 AIMP1P2-201ENST00000425294 312 ntBASIC3.14□□□□□ -1.91
LIMCH1Q9UPQ0 AC087499.2-201ENST00000432861 149 ntBASIC3.14□□□□□ -1.91
LIMCH1Q9UPQ0 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC3.14□□□□□ -1.91
LIMCH1Q9UPQ0 RPL23AP58-201ENST00000440453 469 ntBASIC3.14□□□□□ -1.91
LIMCH1Q9UPQ0 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.14□□□□□ -1.91
LIMCH1Q9UPQ0 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC3.14□□□□□ -1.91
LIMCH1Q9UPQ0 AC022616.4-201ENST00000522985 181 ntBASIC3.14□□□□□ -1.91
LIMCH1Q9UPQ0 AC079600.2-201ENST00000550076 130 ntBASIC3.14□□□□□ -1.91
LIMCH1Q9UPQ0 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC3.14□□□□□ -1.91
LIMCH1Q9UPQ0 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.14□□□□□ -1.91
LIMCH1Q9UPQ0 AC006600.1-201ENST00000572529 153 ntBASIC3.14□□□□□ -1.91
LIMCH1Q9UPQ0 MIR3200-201ENST00000580767 85 ntBASIC3.14□□□□□ -1.91
LIMCH1Q9UPQ0 MIR4635-201ENST00000583759 79 ntBASIC3.14□□□□□ -1.91
LIMCH1Q9UPQ0 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.14□□□□□ -1.91
LIMCH1Q9UPQ0 AC008737.2-201ENST00000599446 118 ntBASIC3.14□□□□□ -1.91
LIMCH1Q9UPQ0 Z98751.3-201ENST00000604447 521 ntBASIC3.14□□□□□ -1.91
LIMCH1Q9UPQ0 AC093732.2-201ENST00000607950 274 ntBASIC3.14□□□□□ -1.91
LIMCH1Q9UPQ0 AL162373.1-201ENST00000620433 407 ntBASIC3.14□□□□□ -1.91
LIMCH1Q9UPQ0 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.14□□□□□ -1.91
LIMCH1Q9UPQ0 CBX3P9-201ENST00000402326 552 ntBASIC3.13□□□□□ -1.91
LIMCH1Q9UPQ0 MIR1289-1-201ENST00000408836 144 ntBASIC3.13□□□□□ -1.91
LIMCH1Q9UPQ0 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.13□□□□□ -1.91
LIMCH1Q9UPQ0 MICF-203ENST00000432679 129 ntBASIC3.13□□□□□ -1.91
LIMCH1Q9UPQ0 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.13□□□□□ -1.91
LIMCH1Q9UPQ0 AL121594.1-201ENST00000475906 575 ntBASIC3.13□□□□□ -1.91
LIMCH1Q9UPQ0 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.13□□□□□ -1.91
LIMCH1Q9UPQ0 RNU6-764P-201ENST00000516396 105 ntBASIC3.13□□□□□ -1.91
LIMCH1Q9UPQ0 Y_RNA.720-201ENST00000517166 92 ntBASIC3.13□□□□□ -1.91
LIMCH1Q9UPQ0 AC027176.1-201ENST00000560204 514 ntBASIC3.13□□□□□ -1.91
LIMCH1Q9UPQ0 AC090617.3-201ENST00000573670 475 ntBASIC3.13□□□□□ -1.91
LIMCH1Q9UPQ0 AC103810.1-201ENST00000579873 453 ntBASIC3.13□□□□□ -1.91
LIMCH1Q9UPQ0 AC078899.3-201ENST00000599065 212 ntBASIC3.13□□□□□ -1.91
LIMCH1Q9UPQ0 AL034555.1-201ENST00000604816 211 ntBASIC3.13□□□□□ -1.91
LIMCH1Q9UPQ0 AC005520.5-201ENST00000613926 164 ntBASIC3.13□□□□□ -1.91
LIMCH1Q9UPQ0 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.13□□□□□ -1.91
LIMCH1Q9UPQ0 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
LIMCH1Q9UPQ0 AL365361.1-201ENST00000566942 3481 ntBASIC3.13□□□□□ -1.91
LIMCH1Q9UPQ0 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
LIMCH1Q9UPQ0 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
LIMCH1Q9UPQ0 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 Y_RNA.40-201ENST00000362645 93 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 Y_RNA.106-201ENST00000363189 100 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 SNORD115-8-201ENST00000363856 82 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 SNORD115-38-201ENST00000365037 82 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 Y_RNA.358-201ENST00000365491 99 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 Y_RNA.389-201ENST00000383924 113 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 SNORA36A-201ENST00000384221 132 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 Y_RNA.455-201ENST00000384230 98 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 RNU6-541P-201ENST00000384709 110 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 MIR483-201ENST00000385070 76 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 SNORA26.7-201ENST00000391288 122 ntBASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC3.12□□□□□ -1.91
LIMCH1Q9UPQ0 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 118.4 ms