Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL512605.2-201ENST00000592972 256 ntBASIC3.79□□□□□ -1.8
LIG3P49916 Y_RNA.771-201ENST00000598668 102 ntBASIC3.79□□□□□ -1.8
LIG3P49916 Y_RNA.789-201ENST00000622480 102 ntBASIC3.79□□□□□ -1.8
LIG3P49916 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC3.79□□□□□ -1.8
LIG3P49916 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LIG3P49916 ANKRD30BP1-201ENST00000451052 2186 ntBASIC3.79□□□□□ -1.8
LIG3P49916 AL021368.2-201ENST00000606125 5352 ntBASIC3.79□□□□□ -1.8
LIG3P49916 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
LIG3P49916 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.78□□□□□ -1.8
LIG3P49916 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
LIG3P49916 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.78□□□□□ -1.8
LIG3P49916 RNU4-15P-201ENST00000362613 141 ntBASIC3.78□□□□□ -1.8
LIG3P49916 RNY4P28-201ENST00000365281 93 ntBASIC3.78□□□□□ -1.8
LIG3P49916 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
LIG3P49916 RNU6-886P-201ENST00000384319 105 ntBASIC3.78□□□□□ -1.8
LIG3P49916 MIR548M-201ENST00000408260 86 ntBASIC3.78□□□□□ -1.8
LIG3P49916 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.78□□□□□ -1.8
LIG3P49916 AL133547.1-201ENST00000448546 220 ntBASIC3.78□□□□□ -1.8
LIG3P49916 RNU7-120P-201ENST00000459334 63 ntBASIC3.78□□□□□ -1.8
LIG3P49916 RPS27P29-201ENST00000463110 252 ntBASIC3.78□□□□□ -1.8
LIG3P49916 RPL36AP48-201ENST00000485521 314 ntBASIC3.78□□□□□ -1.8
LIG3P49916 RPL21P129-201ENST00000491732 478 ntBASIC3.78□□□□□ -1.8
LIG3P49916 AC145146.1-201ENST00000496370 254 ntBASIC3.78□□□□□ -1.8
LIG3P49916 RAC1P2-201ENST00000511164 579 ntBASIC3.78□□□□□ -1.8
LIG3P49916 SNORD116-28-201ENST00000516123 91 ntBASIC3.78□□□□□ -1.8
LIG3P49916 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC3.78□□□□□ -1.8
LIG3P49916 RPL21P9-201ENST00000556149 474 ntBASIC3.78□□□□□ -1.8
LIG3P49916 MIR5187-201ENST00000583479 76 ntBASIC3.78□□□□□ -1.8
LIG3P49916 SNORA62.6-201ENST00000606322 83 ntBASIC3.78□□□□□ -1.8
LIG3P49916 RNU1-30P-201ENST00000606575 163 ntBASIC3.78□□□□□ -1.8
LIG3P49916 AC004467.1-201ENST00000615678 330 ntBASIC3.78□□□□□ -1.8
LIG3P49916 AC005562.2-201ENST00000618264 111 ntBASIC3.78□□□□□ -1.8
LIG3P49916 AC091932.3-201ENST00000624223 323 ntBASIC3.78□□□□□ -1.8
LIG3P49916 MIR3674-201ENST00000636576 68 ntBASIC3.78□□□□□ -1.8
LIG3P49916 AC012442.3-202ENST00000636742 206 ntBASIC3.78□□□□□ -1.8
LIG3P49916 AC092593.1-201ENST00000515413 1815 ntBASIC3.78□□□□□ -1.8
LIG3P49916 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.78□□□□□ -1.8
LIG3P49916 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.77□□□□□ -1.81
LIG3P49916 AC007256.1-201ENST00000392253 2765 ntBASIC3.77□□□□□ -1.81
LIG3P49916 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
LIG3P49916 RNU6-1289P-201ENST00000384431 106 ntBASIC3.77□□□□□ -1.81
LIG3P49916 RNA5SP475-201ENST00000410568 110 ntBASIC3.77□□□□□ -1.81
LIG3P49916 GOT2P5-201ENST00000433995 546 ntBASIC3.77□□□□□ -1.81
LIG3P49916 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC3.77□□□□□ -1.81
LIG3P49916 RPS4XP2-201ENST00000458402 793 ntBASIC3.77□□□□□ -1.81
LIG3P49916 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC3.77□□□□□ -1.81
LIG3P49916 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.77□□□□□ -1.81
LIG3P49916 MIR4282-201ENST00000583613 67 ntBASIC3.77□□□□□ -1.81
LIG3P49916 TCL6_2.1-201ENST00000615162 119 ntBASIC3.77□□□□□ -1.81
LIG3P49916 AC018692.3-201ENST00000623929 123 ntBASIC3.77□□□□□ -1.81
LIG3P49916 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
LIG3P49916 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
LIG3P49916 AC026241.1-201ENST00000517873 2142 ntBASIC3.77□□□□□ -1.81
LIG3P49916 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
LIG3P49916 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.77□□□□□ -1.81
LIG3P49916 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
LIG3P49916 Y_RNA.101-201ENST00000363154 102 ntBASIC3.76□□□□□ -1.81
LIG3P49916 AC027124.2-201ENST00000428249 105 ntBASIC3.76□□□□□ -1.81
LIG3P49916 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.76□□□□□ -1.81
LIG3P49916 Y_RNA.638-201ENST00000459374 113 ntBASIC3.76□□□□□ -1.81
LIG3P49916 RNA5SP208-201ENST00000516156 78 ntBASIC3.76□□□□□ -1.81
LIG3P49916 RNU6-155P-201ENST00000516347 100 ntBASIC3.76□□□□□ -1.81
LIG3P49916 AC079598.5-201ENST00000547460 117 ntBASIC3.76□□□□□ -1.81
LIG3P49916 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.76□□□□□ -1.81
LIG3P49916 MIR4429-201ENST00000580105 73 ntBASIC3.76□□□□□ -1.81
LIG3P49916 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.76□□□□□ -1.81
LIG3P49916 AC011471.1-201ENST00000585766 187 ntBASIC3.76□□□□□ -1.81
LIG3P49916 AL137849.1-201ENST00000604767 169 ntBASIC3.76□□□□□ -1.81
LIG3P49916 SNORD11B-201ENST00000607707 90 ntBASIC3.76□□□□□ -1.81
LIG3P49916 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.76□□□□□ -1.81
LIG3P49916 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
LIG3P49916 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
LIG3P49916 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.76□□□□□ -1.81
LIG3P49916 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
LIG3P49916 RNU6-1264P-201ENST00000383891 107 ntBASIC3.75□□□□□ -1.81
LIG3P49916 MIR200C-201ENST00000384980 68 ntBASIC3.75□□□□□ -1.81
LIG3P49916 RNA5SP293-201ENST00000410527 113 ntBASIC3.75□□□□□ -1.81
LIG3P49916 RNU6-651P-201ENST00000411040 105 ntBASIC3.75□□□□□ -1.81
LIG3P49916 HMGN2P31-201ENST00000432430 273 ntBASIC3.75□□□□□ -1.81
LIG3P49916 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC3.75□□□□□ -1.81
LIG3P49916 HMGN2P20-201ENST00000437531 273 ntBASIC3.75□□□□□ -1.81
LIG3P49916 RNU1-95P-201ENST00000516357 160 ntBASIC3.75□□□□□ -1.81
LIG3P49916 RNU6-344P-201ENST00000516635 111 ntBASIC3.75□□□□□ -1.81
LIG3P49916 RNU1-128P-201ENST00000516704 160 ntBASIC3.75□□□□□ -1.81
LIG3P49916 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.75□□□□□ -1.81
LIG3P49916 MIR4474-201ENST00000579189 78 ntBASIC3.75□□□□□ -1.81
LIG3P49916 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC3.75□□□□□ -1.81
LIG3P49916 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
LIG3P49916 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.74□□□□□ -1.81
LIG3P49916 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.74□□□□□ -1.81
LIG3P49916 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
LIG3P49916 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.74□□□□□ -1.81
LIG3P49916 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
LIG3P49916 RNU1-75P-201ENST00000347264 129 ntBASIC3.74□□□□□ -1.81
LIG3P49916 RNU6-1020P-201ENST00000363684 107 ntBASIC3.74□□□□□ -1.81
LIG3P49916 Y_RNA.415-201ENST00000384012 112 ntBASIC3.74□□□□□ -1.81
LIG3P49916 MIR23B-201ENST00000384832 97 ntBASIC3.74□□□□□ -1.81
LIG3P49916 AL035423.1-201ENST00000420331 213 ntBASIC3.74□□□□□ -1.81
LIG3P49916 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.74□□□□□ -1.81
LIG3P49916 AC004386.2-201ENST00000441858 148 ntBASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 160.3 ms