Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 Y_RNA.160-201ENST00000363677 92 ntBASIC1.97□□□□□ -2.09
TNFRSF4P43489 VN1R36P-201ENST00000414936 291 ntBASIC1.97□□□□□ -2.09
TNFRSF4P43489 AL513185.2-201ENST00000425543 193 ntBASIC1.97□□□□□ -2.09
TNFRSF4P43489 CBX3P6-201ENST00000430257 527 ntBASIC1.97□□□□□ -2.09
TNFRSF4P43489 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.97□□□□□ -2.09
TNFRSF4P43489 RNU7-66P-201ENST00000459469 62 ntBASIC1.97□□□□□ -2.09
TNFRSF4P43489 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.97□□□□□ -2.09
TNFRSF4P43489 TRBVA-201ENST00000498804 316 ntBASIC1.97□□□□□ -2.09
TNFRSF4P43489 HMGB1P35-201ENST00000503360 598 ntBASIC1.97□□□□□ -2.09
TNFRSF4P43489 AL117351.2-201ENST00000513571 157 ntBASIC1.97□□□□□ -2.09
TNFRSF4P43489 RNU6-965P-201ENST00000516721 96 ntBASIC1.97□□□□□ -2.09
TNFRSF4P43489 RNU6-256P-201ENST00000516747 97 ntBASIC1.97□□□□□ -2.09
TNFRSF4P43489 RNA5SP402-201ENST00000517148 110 ntBASIC1.97□□□□□ -2.09
TNFRSF4P43489 MIR5694-201ENST00000581190 76 ntBASIC1.97□□□□□ -2.09
TNFRSF4P43489 MIR3136-201ENST00000583498 78 ntBASIC1.97□□□□□ -2.09
TNFRSF4P43489 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.97□□□□□ -2.09
TNFRSF4P43489 AC009314.1-201ENST00000603871 304 ntBASIC1.97□□□□□ -2.09
TNFRSF4P43489 AL356157.2-201ENST00000605122 111 ntBASIC1.97□□□□□ -2.09
TNFRSF4P43489 AC018889.1-201ENST00000605372 397 ntBASIC1.97□□□□□ -2.09
TNFRSF4P43489 SNORD98-201ENST00000636377 67 ntBASIC1.97□□□□□ -2.09
TNFRSF4P43489 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
TNFRSF4P43489 RNU1-17P-201ENST00000363022 152 ntBASIC1.96□□□□□ -2.1
TNFRSF4P43489 SNORA16B-201ENST00000364674 135 ntBASIC1.96□□□□□ -2.1
TNFRSF4P43489 RNU4-56P-201ENST00000364700 142 ntBASIC1.96□□□□□ -2.1
TNFRSF4P43489 RNU2-48P-201ENST00000410694 191 ntBASIC1.96□□□□□ -2.1
TNFRSF4P43489 RNU6-1148P-201ENST00000410992 104 ntBASIC1.96□□□□□ -2.1
TNFRSF4P43489 MTCO3P18-201ENST00000440206 761 ntBASIC1.96□□□□□ -2.1
TNFRSF4P43489 RBMX2P4-201ENST00000441256 376 ntBASIC1.96□□□□□ -2.1
TNFRSF4P43489 IPO7P1-201ENST00000442031 636 ntBASIC1.96□□□□□ -2.1
TNFRSF4P43489 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.96□□□□□ -2.1
TNFRSF4P43489 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.96□□□□□ -2.1
TNFRSF4P43489 AC245102.2-201ENST00000448956 180 ntBASIC1.96□□□□□ -2.1
TNFRSF4P43489 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.96□□□□□ -2.1
TNFRSF4P43489 PRDX4P1-201ENST00000507189 574 ntBASIC1.96□□□□□ -2.1
TNFRSF4P43489 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.96□□□□□ -2.1
TNFRSF4P43489 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.96□□□□□ -2.1
TNFRSF4P43489 AC026371.1-201ENST00000551867 419 ntBASIC1.96□□□□□ -2.1
TNFRSF4P43489 MIR4801-201ENST00000582704 82 ntBASIC1.96□□□□□ -2.1
TNFRSF4P43489 AC064836.2-201ENST00000609491 462 ntBASIC1.96□□□□□ -2.1
TNFRSF4P43489 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.96□□□□□ -2.1
TNFRSF4P43489 FAM157A-202ENST00000615155 405 ntBASIC1.96□□□□□ -2.1
TNFRSF4P43489 AL132822.1-201ENST00000617063 513 ntBASIC1.96□□□□□ -2.1
TNFRSF4P43489 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
TNFRSF4P43489 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.95□□□□□ -2.1
TNFRSF4P43489 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
TNFRSF4P43489 RNU6-1329P-201ENST00000365664 107 ntBASIC1.95□□□□□ -2.1
TNFRSF4P43489 RNU6-128P-201ENST00000383976 107 ntBASIC1.95□□□□□ -2.1
TNFRSF4P43489 MIR29C-201ENST00000385231 88 ntBASIC1.95□□□□□ -2.1
TNFRSF4P43489 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC1.95□□□□□ -2.1
TNFRSF4P43489 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC1.95□□□□□ -2.1
TNFRSF4P43489 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.95□□□□□ -2.1
TNFRSF4P43489 AL590135.1-201ENST00000422215 156 ntBASIC1.95□□□□□ -2.1
TNFRSF4P43489 AC019205.3-201ENST00000424573 156 ntBASIC1.95□□□□□ -2.1
TNFRSF4P43489 SNAP23P1-201ENST00000433229 246 ntBASIC1.95□□□□□ -2.1
TNFRSF4P43489 IFNA20P-201ENST00000436840 528 ntBASIC1.95□□□□□ -2.1
TNFRSF4P43489 AC244670.1-201ENST00000436879 112 ntBASIC1.95□□□□□ -2.1
TNFRSF4P43489 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.95□□□□□ -2.1
TNFRSF4P43489 MTND4LP16-201ENST00000440828 295 ntBASIC1.95□□□□□ -2.1
TNFRSF4P43489 AC016700.2-201ENST00000446011 156 ntBASIC1.95□□□□□ -2.1
TNFRSF4P43489 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.95□□□□□ -2.1
TNFRSF4P43489 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.95□□□□□ -2.1
TNFRSF4P43489 PRELID3BP1-201ENST00000457142 540 ntBASIC1.95□□□□□ -2.1
TNFRSF4P43489 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.95□□□□□ -2.1
TNFRSF4P43489 RNU6-1037P-201ENST00000459571 107 ntBASIC1.95□□□□□ -2.1
TNFRSF4P43489 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.95□□□□□ -2.1
TNFRSF4P43489 AC015911.1-201ENST00000495111 156 ntBASIC1.95□□□□□ -2.1
TNFRSF4P43489 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.95□□□□□ -2.1
TNFRSF4P43489 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.95□□□□□ -2.1
TNFRSF4P43489 RPL39P5-202ENST00000512505 151 ntBASIC1.95□□□□□ -2.1
TNFRSF4P43489 HSPE1P4-201ENST00000550617 308 ntBASIC1.95□□□□□ -2.1
TNFRSF4P43489 MIR3942-201ENST00000585264 109 ntBASIC1.95□□□□□ -2.1
TNFRSF4P43489 AC011712.1-201ENST00000588959 234 ntBASIC1.95□□□□□ -2.1
TNFRSF4P43489 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.95□□□□□ -2.1
TNFRSF4P43489 AP000942.3-201ENST00000603702 160 ntBASIC1.95□□□□□ -2.1
TNFRSF4P43489 AC009248.2-201ENST00000619826 254 ntBASIC1.95□□□□□ -2.1
TNFRSF4P43489 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.95□□□□□ -2.1
TNFRSF4P43489 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
TNFRSF4P43489 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.95□□□□□ -2.1
TNFRSF4P43489 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.95□□□□□ -2.1
TNFRSF4P43489 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC1.94□□□□□ -2.1
TNFRSF4P43489 CBX3P1-201ENST00000325243 554 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 AL596028.1-201ENST00000326971 197 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 Y_RNA.72-201ENST00000362894 103 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 SNORD115-3-201ENST00000363100 82 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 RNU6-1283P-201ENST00000365314 105 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 RNU6-142P-201ENST00000384019 107 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 RNU6-1013P-201ENST00000384180 107 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 MIR518A2-201ENST00000384966 87 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 MT-TL1-201ENST00000386347 75 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 RNA5SP213-201ENST00000391031 106 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 BTF3L4P2-201ENST00000392798 346 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 RN7SKP61-201ENST00000410642 295 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 UBE2V1P4-201ENST00000425374 344 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 AC078809.1-201ENST00000427601 140 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 CR769767.1-201ENST00000436337 346 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.94□□□□□ -2.1
TNFRSF4P43489 AC092473.1-201ENST00000441098 221 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 MTCO2P3-201ENST00000442543 421 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.94□□□□□ -2.1
TNFRSF4P43489 AC025033.1-201ENST00000463883 194 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 192.2 ms