Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AC009033.1-201ENST00000624279 431 ntBASIC0.61□□□□□ -2.31
COL4A5P29400 AL391516.1-201ENST00000554380 2449 ntBASIC0.6□□□□□ -2.31
COL4A5P29400 RNU1-124P-201ENST00000363861 145 ntBASIC0.6□□□□□ -2.31
COL4A5P29400 RNU6-384P-201ENST00000364900 104 ntBASIC0.6□□□□□ -2.31
COL4A5P29400 SNORD115.1-201ENST00000391109 76 ntBASIC0.6□□□□□ -2.31
COL4A5P29400 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC0.6□□□□□ -2.31
COL4A5P29400 RNU6-387P-201ENST00000411331 105 ntBASIC0.6□□□□□ -2.31
COL4A5P29400 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC0.6□□□□□ -2.31
COL4A5P29400 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC0.6□□□□□ -2.31
COL4A5P29400 MTCO3P29-201ENST00000432119 779 ntBASIC0.6□□□□□ -2.31
COL4A5P29400 AC244670.1-201ENST00000436879 112 ntBASIC0.6□□□□□ -2.31
COL4A5P29400 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC0.6□□□□□ -2.31
COL4A5P29400 snoU13.30-201ENST00000458951 104 ntBASIC0.6□□□□□ -2.31
COL4A5P29400 snoU13.27-201ENST00000459278 104 ntBASIC0.6□□□□□ -2.31
COL4A5P29400 AC079140.5-201ENST00000507882 310 ntBASIC0.6□□□□□ -2.31
COL4A5P29400 AC104136.1-201ENST00000512969 394 ntBASIC0.6□□□□□ -2.31
COL4A5P29400 RNU6-1146P-201ENST00000516282 102 ntBASIC0.6□□□□□ -2.31
COL4A5P29400 MTND2P7-201ENST00000521337 640 ntBASIC0.6□□□□□ -2.31
COL4A5P29400 MIR4509-3-201ENST00000578671 94 ntBASIC0.6□□□□□ -2.31
COL4A5P29400 MIR4802-201ENST00000581881 80 ntBASIC0.6□□□□□ -2.31
COL4A5P29400 MIR4509-2-201ENST00000583920 94 ntBASIC0.6□□□□□ -2.31
COL4A5P29400 AC091135.1-201ENST00000585943 307 ntBASIC0.6□□□□□ -2.31
COL4A5P29400 AC069114.2-201ENST00000604699 304 ntBASIC0.6□□□□□ -2.31
COL4A5P29400 BCRP9-201ENST00000605312 388 ntBASIC0.6□□□□□ -2.31
COL4A5P29400 MIR4509-1-201ENST00000618224 94 ntBASIC0.6□□□□□ -2.31
COL4A5P29400 AC068787.1-201ENST00000623908 691 ntBASIC0.6□□□□□ -2.31
COL4A5P29400 UGP2-231ENST00000627474 264 ntTSL 5 BASIC0.6□□□□□ -2.31
COL4A5P29400 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
COL4A5P29400 RNU4-15P-201ENST00000362613 141 ntBASIC0.59□□□□□ -2.31
COL4A5P29400 SNORA25-201ENST00000384384 134 ntBASIC0.59□□□□□ -2.31
COL4A5P29400 RNU6-1065P-201ENST00000384513 106 ntBASIC0.59□□□□□ -2.31
COL4A5P29400 MIR515-2-201ENST00000384883 83 ntBASIC0.59□□□□□ -2.31
COL4A5P29400 MIR515-1-201ENST00000384884 83 ntBASIC0.59□□□□□ -2.31
COL4A5P29400 RNU2-8P-201ENST00000410727 190 ntBASIC0.59□□□□□ -2.31
COL4A5P29400 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC0.59□□□□□ -2.31
COL4A5P29400 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC0.59□□□□□ -2.31
COL4A5P29400 AC119618.1-201ENST00000434191 222 ntBASIC0.59□□□□□ -2.31
COL4A5P29400 SNRPEP8-201ENST00000442866 260 ntBASIC0.59□□□□□ -2.31
COL4A5P29400 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC0.59□□□□□ -2.31
COL4A5P29400 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.59□□□□□ -2.31
COL4A5P29400 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC0.59□□□□□ -2.31
COL4A5P29400 RNU7-14P-201ENST00000459331 62 ntBASIC0.59□□□□□ -2.31
COL4A5P29400 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.59□□□□□ -2.31
COL4A5P29400 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC0.59□□□□□ -2.31
COL4A5P29400 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC0.59□□□□□ -2.31
COL4A5P29400 EIF4A1P12-201ENST00000551910 141 ntBASIC0.59□□□□□ -2.31
COL4A5P29400 AC019288.1-201ENST00000557918 224 ntBASIC0.59□□□□□ -2.31
COL4A5P29400 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC0.59□□□□□ -2.31
COL4A5P29400 AC012409.4-201ENST00000612923 249 ntBASIC0.59□□□□□ -2.31
COL4A5P29400 U4.7-201ENST00000638126 106 ntBASIC0.59□□□□□ -2.31
COL4A5P29400 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.59□□□□□ -2.31
COL4A5P29400 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.59□□□□□ -2.32
COL4A5P29400 RNY4P16-201ENST00000364768 94 ntBASIC0.59□□□□□ -2.32
COL4A5P29400 Y_RNA.324-201ENST00000365165 102 ntBASIC0.59□□□□□ -2.32
COL4A5P29400 SNORA2A-201ENST00000383885 135 ntBASIC0.59□□□□□ -2.32
COL4A5P29400 RNU6-296P-201ENST00000384608 107 ntBASIC0.59□□□□□ -2.32
COL4A5P29400 MIR194-1-201ENST00000384892 85 ntBASIC0.59□□□□□ -2.32
COL4A5P29400 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.59□□□□□ -2.32
COL4A5P29400 AC073910.1-201ENST00000445047 438 ntBASIC0.59□□□□□ -2.32
COL4A5P29400 AL031313.1-201ENST00000448435 256 ntBASIC0.59□□□□□ -2.32
COL4A5P29400 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.59□□□□□ -2.32
COL4A5P29400 MTND1P12-201ENST00000455231 147 ntBASIC0.59□□□□□ -2.32
COL4A5P29400 HMGN2P9-201ENST00000476875 229 ntBASIC0.59□□□□□ -2.32
COL4A5P29400 RN7SKP88-201ENST00000516847 250 ntBASIC0.59□□□□□ -2.32
COL4A5P29400 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC0.59□□□□□ -2.32
COL4A5P29400 AP002453.2-201ENST00000533503 320 ntBASIC0.59□□□□□ -2.32
COL4A5P29400 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC0.59□□□□□ -2.32
COL4A5P29400 CYP3A52P-201ENST00000563326 91 ntBASIC0.59□□□□□ -2.32
COL4A5P29400 AC012414.6-201ENST00000568241 401 ntBASIC0.59□□□□□ -2.32
COL4A5P29400 AC068790.6-201ENST00000602558 258 ntBASIC0.59□□□□□ -2.32
COL4A5P29400 Z99289.3-201ENST00000605586 594 ntBASIC0.59□□□□□ -2.32
COL4A5P29400 7SK.8-201ENST00000612110 250 ntBASIC0.59□□□□□ -2.32
COL4A5P29400 7SK.11-201ENST00000615477 250 ntBASIC0.59□□□□□ -2.32
COL4A5P29400 7SK.13-201ENST00000622040 250 ntBASIC0.59□□□□□ -2.32
COL4A5P29400 AP002782.1-201ENST00000623107 614 ntBASIC0.59□□□□□ -2.32
COL4A5P29400 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.59□□□□□ -2.32
COL4A5P29400 SNORD98-201ENST00000636377 67 ntBASIC0.59□□□□□ -2.32
COL4A5P29400 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC0.58□□□□□ -2.32
COL4A5P29400 RNU4-67P-201ENST00000364569 141 ntBASIC0.58□□□□□ -2.32
COL4A5P29400 RNU6-43P-201ENST00000384302 107 ntBASIC0.58□□□□□ -2.32
COL4A5P29400 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.58□□□□□ -2.32
COL4A5P29400 MTCYBP39-201ENST00000437562 491 ntBASIC0.58□□□□□ -2.32
COL4A5P29400 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC0.58□□□□□ -2.32
COL4A5P29400 MTCO2P29-201ENST00000465212 189 ntBASIC0.58□□□□□ -2.32
COL4A5P29400 SNRPGP7-201ENST00000469016 106 ntBASIC0.58□□□□□ -2.32
COL4A5P29400 TRBVB-201ENST00000477100 408 ntBASIC0.58□□□□□ -2.32
COL4A5P29400 MTND3P25-201ENST00000509243 135 ntBASIC0.58□□□□□ -2.32
COL4A5P29400 MTND4LP18-201ENST00000526864 291 ntBASIC0.58□□□□□ -2.32
COL4A5P29400 MIR4661-201ENST00000582720 75 ntBASIC0.58□□□□□ -2.32
COL4A5P29400 AP003465.2-201ENST00000602571 373 ntBASIC0.58□□□□□ -2.32
COL4A5P29400 AL365434.2-201ENST00000607979 234 ntBASIC0.58□□□□□ -2.32
COL4A5P29400 AC107308.1-201ENST00000615897 301 ntBASIC0.58□□□□□ -2.32
COL4A5P29400 AL031667.3-201ENST00000620124 655 ntBASIC0.58□□□□□ -2.32
COL4A5P29400 AC068205.3-201ENST00000636385 468 ntBASIC0.58□□□□□ -2.32
COL4A5P29400 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.57□□□□□ -2.32
COL4A5P29400 RNU4-68P-201ENST00000364314 141 ntBASIC0.57□□□□□ -2.32
COL4A5P29400 RNU1-36P-201ENST00000365130 165 ntBASIC0.57□□□□□ -2.32
COL4A5P29400 RNU6-25P-201ENST00000383873 107 ntBASIC0.57□□□□□ -2.32
COL4A5P29400 RNU6-48P-201ENST00000384161 107 ntBASIC0.57□□□□□ -2.32
COL4A5P29400 RNU6-15P-201ENST00000384534 107 ntBASIC0.57□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms