Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC87Q9NVE4 AC026333.2-201ENST00000542164 106 ntBASIC4.29□□□□□ -1.72
CCDC87Q9NVE4 AL137100.2-201ENST00000555786 315 ntBASIC4.29□□□□□ -1.72
CCDC87Q9NVE4 AC105137.2-201ENST00000569073 466 ntBASIC4.29□□□□□ -1.72
CCDC87Q9NVE4 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC87Q9NVE4 MIR4672-201ENST00000583126 81 ntBASIC4.29□□□□□ -1.72
CCDC87Q9NVE4 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC87Q9NVE4 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC87Q9NVE4 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC87Q9NVE4 RNA5SP322-201ENST00000363617 119 ntBASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 Y_RNA.199-201ENST00000364014 102 ntBASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 RNU6-245P-201ENST00000384020 107 ntBASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 RNU6-20P-201ENST00000384106 107 ntBASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 MIR3074-201ENST00000384885 81 ntBASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 AL138878.1-201ENST00000405131 347 ntBASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 MIR548M-201ENST00000408260 86 ntBASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 Y_RNA.793-201ENST00000411222 111 ntBASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 RPL23AP36-201ENST00000413895 458 ntBASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 AC019205.3-201ENST00000424573 156 ntBASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 AL714022.1-201ENST00000439897 151 ntBASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 AC007395.1-201ENST00000451333 677 ntBASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 AP000705.1-201ENST00000454567 350 ntBASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 snoU13.6-201ENST00000458785 104 ntBASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 Y_RNA.644-201ENST00000459006 113 ntBASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 Y_RNA.674-201ENST00000516362 113 ntBASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 MIR4643-201ENST00000577473 78 ntBASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 RPL12P50-201ENST00000603116 116 ntBASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 HNRNPDLP4-201ENST00000605144 301 ntBASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 AC093732.2-201ENST00000607950 274 ntBASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC4.28□□□□□ -1.72
CCDC87Q9NVE4 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC4.28□□□□□ -1.73
CCDC87Q9NVE4 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 RNU6-514P-201ENST00000384208 107 ntBASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 SNORA44-201ENST00000384584 132 ntBASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 RNU1-89P-201ENST00000384592 164 ntBASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 RNU6-19P-201ENST00000384718 107 ntBASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 EI24P2-201ENST00000397776 1076 ntBASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 MIR320B2-201ENST00000408479 138 ntBASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 AC006989.1-201ENST00000427212 131 ntBASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 RPS15AP5-201ENST00000436276 388 ntBASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 MTND2P29-201ENST00000438595 412 ntBASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 RNU7-23P-201ENST00000459465 62 ntBASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 AC109925.1-201ENST00000478069 331 ntBASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 AC074133.1-201ENST00000515696 183 ntBASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 Y_RNA.683-201ENST00000516508 93 ntBASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 AC233702.2-202ENST00000562547 291 ntBASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 CYP4A27P-201ENST00000567218 190 ntBASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 AL162424.1-201ENST00000602325 221 ntBASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 AL033523.1-201ENST00000605153 153 ntBASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 HOTTIP_4.1-201ENST00000618195 165 ntBASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 BX322639.1-202ENST00000423987 2213 ntBASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 AL109809.4-201ENST00000603520 2185 ntBASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
CCDC87Q9NVE4 SNORA25.1-201ENST00000362326 128 ntBASIC4.26□□□□□ -1.73
CCDC87Q9NVE4 RNU6-873P-201ENST00000363833 107 ntBASIC4.26□□□□□ -1.73
CCDC87Q9NVE4 Y_RNA.286-201ENST00000364813 102 ntBASIC4.26□□□□□ -1.73
CCDC87Q9NVE4 RNA5-8SP4-201ENST00000365096 150 ntBASIC4.26□□□□□ -1.73
CCDC87Q9NVE4 MIR487A-201ENST00000385009 80 ntBASIC4.26□□□□□ -1.73
CCDC87Q9NVE4 RNU4-30P-201ENST00000410245 143 ntBASIC4.26□□□□□ -1.73
CCDC87Q9NVE4 AC107083.1-201ENST00000439643 279 ntBASIC4.26□□□□□ -1.73
CCDC87Q9NVE4 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC4.26□□□□□ -1.73
CCDC87Q9NVE4 AIG1P1-201ENST00000503376 148 ntBASIC4.26□□□□□ -1.73
CCDC87Q9NVE4 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC4.26□□□□□ -1.73
CCDC87Q9NVE4 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC87Q9NVE4 AC005176.2-201ENST00000596933 147 ntBASIC4.26□□□□□ -1.73
CCDC87Q9NVE4 AL078605.1-201ENST00000603529 500 ntBASIC4.26□□□□□ -1.73
CCDC87Q9NVE4 AC091152.3-201ENST00000604227 325 ntBASIC4.26□□□□□ -1.73
CCDC87Q9NVE4 AC110741.2-201ENST00000605278 268 ntBASIC4.26□□□□□ -1.73
CCDC87Q9NVE4 AC005520.5-201ENST00000613926 164 ntBASIC4.26□□□□□ -1.73
CCDC87Q9NVE4 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.26□□□□□ -1.73
CCDC87Q9NVE4 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC87Q9NVE4 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC87Q9NVE4 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC87Q9NVE4 AC068647.1-201ENST00000489539 2265 ntBASIC4.25□□□□□ -1.73
CCDC87Q9NVE4 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC87Q9NVE4 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC87Q9NVE4 RNA5SP126-201ENST00000365092 109 ntBASIC4.25□□□□□ -1.73
CCDC87Q9NVE4 RNU6-1175P-201ENST00000365200 107 ntBASIC4.25□□□□□ -1.73
CCDC87Q9NVE4 HMGN2P8-201ENST00000391458 268 ntBASIC4.25□□□□□ -1.73
CCDC87Q9NVE4 AC023141.4-201ENST00000412031 328 ntBASIC4.25□□□□□ -1.73
CCDC87Q9NVE4 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC4.25□□□□□ -1.73
CCDC87Q9NVE4 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC4.25□□□□□ -1.73
CCDC87Q9NVE4 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC87Q9NVE4 AC090525.1-201ENST00000479116 478 ntBASIC4.25□□□□□ -1.73
CCDC87Q9NVE4 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC87Q9NVE4 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.25□□□□□ -1.73
CCDC87Q9NVE4 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 142.4 ms