Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RNU6-607P-201ENST00000411283 108 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 RNA5SP111-201ENST00000411386 101 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 AL031779.1-201ENST00000415663 330 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 AC078809.1-201ENST00000427601 140 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 AL591043.1-201ENST00000432461 424 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 AL031313.1-201ENST00000448435 256 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 MTND1P12-201ENST00000455231 147 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 AC006026.2-201ENST00000457376 180 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 AC007547.1-201ENST00000462177 490 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 HMGN2P9-201ENST00000476875 229 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 AC023932.2-201ENST00000603176 175 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 AC012507.3-201ENST00000603556 477 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 AP000860.1-201ENST00000605250 559 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 AL139286.2-201ENST00000606838 396 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 AL158211.2-201ENST00000607282 395 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 AL590240.4-201ENST00000616908 390 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 RMST_7.1-201ENST00000621935 268 ntBASIC0.69□□□□□ -2.3
CCDC88AQ3V6T2 RNU4-15P-201ENST00000362613 141 ntBASIC0.68□□□□□ -2.3
CCDC88AQ3V6T2 ARL5AP1-201ENST00000418991 388 ntBASIC0.68□□□□□ -2.3
CCDC88AQ3V6T2 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC0.68□□□□□ -2.3
CCDC88AQ3V6T2 MTND1P32-201ENST00000433043 938 ntBASIC0.68□□□□□ -2.3
CCDC88AQ3V6T2 AC000111.3-201ENST00000433478 193 ntBASIC0.68□□□□□ -2.3
CCDC88AQ3V6T2 RPL37P21-201ENST00000435890 276 ntBASIC0.68□□□□□ -2.3
CCDC88AQ3V6T2 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.68□□□□□ -2.3
CCDC88AQ3V6T2 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC0.68□□□□□ -2.3
CCDC88AQ3V6T2 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC0.68□□□□□ -2.3
CCDC88AQ3V6T2 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.68□□□□□ -2.3
CCDC88AQ3V6T2 MIR5697-201ENST00000578045 78 ntBASIC0.68□□□□□ -2.3
CCDC88AQ3V6T2 AC013244.3-201ENST00000605614 388 ntBASIC0.68□□□□□ -2.3
CCDC88AQ3V6T2 AP002360.4-201ENST00000606980 481 ntBASIC0.68□□□□□ -2.3
CCDC88AQ3V6T2 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
CCDC88AQ3V6T2 AL391994.1-201ENST00000254724 282 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 RNU6-78P-201ENST00000362897 107 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 RNU6-527P-201ENST00000363425 104 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 SNORA4.1-201ENST00000364263 144 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 RNU6-296P-201ENST00000384608 107 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 AC016925.1-201ENST00000458303 298 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 AC090115.3-201ENST00000553218 849 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 AC091135.1-201ENST00000585943 307 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 AC108747.1-201ENST00000609508 535 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 AC008147.4-201ENST00000617570 1204 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 AL391516.1-201ENST00000554380 2449 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 RNU6-23P-201ENST00000363283 107 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 Y_RNA.412-201ENST00000384001 104 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 RNU6-769P-201ENST00000384407 104 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 MTND3P17-201ENST00000416968 344 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 PIGFP2-201ENST00000421400 651 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 AC099677.2-201ENST00000436385 175 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 AC244670.1-201ENST00000436879 112 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 MTCYBP39-201ENST00000437562 491 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 RPS24P1-201ENST00000438550 371 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 DYNLT3P2-201ENST00000442517 295 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 snoU13.30-201ENST00000458951 104 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 MTCO2P29-201ENST00000465212 189 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 AC011005.2-201ENST00000487324 359 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 SNORA62.5-201ENST00000516634 120 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 SUMO2P18-201ENST00000518873 252 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 AC022878.1-201ENST00000530684 149 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 TMF1P1-201ENST00000576058 373 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 BNIP3P16-201ENST00000589779 534 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 RPL17P51-201ENST00000605218 238 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 AC006386.1-201ENST00000619436 415 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 Z69720.2-201ENST00000624755 279 ntBASIC0.67□□□□□ -2.3
CCDC88AQ3V6T2 AL159152.1-201ENST00000635019 2587 ntBASIC0.66□□□□□ -2.3
CCDC88AQ3V6T2 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
CCDC88AQ3V6T2 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
CCDC88AQ3V6T2 MTCYBP2-201ENST00000407745 171 ntBASIC0.66□□□□□ -2.3
CCDC88AQ3V6T2 AC114491.1-201ENST00000416095 246 ntBASIC0.66□□□□□ -2.3
CCDC88AQ3V6T2 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC0.66□□□□□ -2.3
CCDC88AQ3V6T2 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.66□□□□□ -2.3
CCDC88AQ3V6T2 OR2AQ1P-201ENST00000451972 200 ntBASIC0.66□□□□□ -2.3
CCDC88AQ3V6T2 AC114982.1-201ENST00000469402 321 ntBASIC0.66□□□□□ -2.3
CCDC88AQ3V6T2 MTND3P5-201ENST00000512798 333 ntBASIC0.66□□□□□ -2.3
CCDC88AQ3V6T2 SNORA31.4-201ENST00000516049 129 ntBASIC0.66□□□□□ -2.3
CCDC88AQ3V6T2 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.66□□□□□ -2.3
CCDC88AQ3V6T2 MIR4653-201ENST00000585107 83 ntBASIC0.66□□□□□ -2.3
CCDC88AQ3V6T2 SNORD98-201ENST00000636377 67 ntBASIC0.66□□□□□ -2.3
CCDC88AQ3V6T2 AC010615.1-201ENST00000594254 1764 ntBASIC0.65□□□□□ -2.3
CCDC88AQ3V6T2 SNORD56.1-201ENST00000362913 68 ntBASIC0.65□□□□□ -2.3
CCDC88AQ3V6T2 RNU4-92P-201ENST00000363783 136 ntBASIC0.65□□□□□ -2.3
CCDC88AQ3V6T2 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC0.65□□□□□ -2.3
CCDC88AQ3V6T2 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC0.65□□□□□ -2.3
CCDC88AQ3V6T2 HSPE1P9-201ENST00000440046 311 ntBASIC0.65□□□□□ -2.3
CCDC88AQ3V6T2 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC0.65□□□□□ -2.3
CCDC88AQ3V6T2 AL163195.1-201ENST00000496941 348 ntBASIC0.65□□□□□ -2.3
CCDC88AQ3V6T2 AC117522.1-201ENST00000509821 380 ntBASIC0.65□□□□□ -2.3
CCDC88AQ3V6T2 RNU6-165P-201ENST00000517170 99 ntBASIC0.65□□□□□ -2.3
CCDC88AQ3V6T2 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.65□□□□□ -2.3
CCDC88AQ3V6T2 AP001893.2-201ENST00000526949 202 ntBASIC0.65□□□□□ -2.3
CCDC88AQ3V6T2 AC087883.1-201ENST00000551882 391 ntBASIC0.65□□□□□ -2.3
CCDC88AQ3V6T2 MIR3923-201ENST00000579521 83 ntBASIC0.65□□□□□ -2.3
CCDC88AQ3V6T2 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC0.65□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms