Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.56□□□□□ -2
USP41Q3LFD5 POLR3GP2-201ENST00000588366 668 ntBASIC2.56□□□□□ -2
USP41Q3LFD5 RNU6-1141P-201ENST00000364520 107 ntBASIC2.55□□□□□ -2
USP41Q3LFD5 SNORD32A-201ENST00000364805 84 ntBASIC2.55□□□□□ -2
USP41Q3LFD5 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.55□□□□□ -2
USP41Q3LFD5 RNU1-138P-201ENST00000384093 164 ntBASIC2.55□□□□□ -2
USP41Q3LFD5 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.55□□□□□ -2
USP41Q3LFD5 NCOR1P3-201ENST00000420479 303 ntBASIC2.55□□□□□ -2
USP41Q3LFD5 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.55□□□□□ -2
USP41Q3LFD5 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.55□□□□□ -2
USP41Q3LFD5 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.55□□□□□ -2
USP41Q3LFD5 MTND4P27-201ENST00000450813 1354 ntBASIC2.55□□□□□ -2
USP41Q3LFD5 snoU13.26-201ENST00000459452 105 ntBASIC2.55□□□□□ -2
USP41Q3LFD5 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.55□□□□□ -2
USP41Q3LFD5 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC2.55□□□□□ -2
USP41Q3LFD5 AC107222.1-201ENST00000510899 637 ntBASIC2.55□□□□□ -2
USP41Q3LFD5 AC109329.1-201ENST00000518744 317 ntBASIC2.55□□□□□ -2
USP41Q3LFD5 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.55□□□□□ -2
USP41Q3LFD5 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.55□□□□□ -2
USP41Q3LFD5 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.55□□□□□ -2
USP41Q3LFD5 AC007375.1-201ENST00000554513 578 ntBASIC2.55□□□□□ -2
USP41Q3LFD5 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.55□□□□□ -2
USP41Q3LFD5 MIR4648-201ENST00000580107 72 ntBASIC2.55□□□□□ -2
USP41Q3LFD5 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.55□□□□□ -2
USP41Q3LFD5 AL356280.1-201ENST00000603614 379 ntBASIC2.55□□□□□ -2
USP41Q3LFD5 AC018889.1-201ENST00000605372 397 ntBASIC2.55□□□□□ -2
USP41Q3LFD5 AC069294.1-201ENST00000608397 350 ntBASIC2.55□□□□□ -2
USP41Q3LFD5 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.55□□□□□ -2
USP41Q3LFD5 AL359757.2-201ENST00000624309 274 ntBASIC2.55□□□□□ -2
USP41Q3LFD5 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.55□□□□□ -2
USP41Q3LFD5 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.55□□□□□ -2
USP41Q3LFD5 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.54□□□□□ -2
USP41Q3LFD5 RNU6-655P-201ENST00000362858 107 ntBASIC2.54□□□□□ -2
USP41Q3LFD5 RNA5SP393-201ENST00000363423 117 ntBASIC2.54□□□□□ -2
USP41Q3LFD5 RNU5E-4P-201ENST00000364931 120 ntBASIC2.54□□□□□ -2
USP41Q3LFD5 RNU6-867P-201ENST00000364956 107 ntBASIC2.54□□□□□ -2
USP41Q3LFD5 Y_RNA.339-201ENST00000365325 102 ntBASIC2.54□□□□□ -2
USP41Q3LFD5 Y_RNA.356-201ENST00000365475 113 ntBASIC2.54□□□□□ -2
USP41Q3LFD5 Y_RNA.504-201ENST00000384481 104 ntBASIC2.54□□□□□ -2
USP41Q3LFD5 SNORA41-201ENST00000384675 132 ntBASIC2.54□□□□□ -2
USP41Q3LFD5 SNORA80E-201ENST00000384744 137 ntBASIC2.54□□□□□ -2
USP41Q3LFD5 RN7SKP158-201ENST00000410453 326 ntBASIC2.54□□□□□ -2
USP41Q3LFD5 Y_RNA.604-201ENST00000410574 102 ntBASIC2.54□□□□□ -2
USP41Q3LFD5 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.54□□□□□ -2
USP41Q3LFD5 DPH3P2-201ENST00000422618 250 ntBASIC2.54□□□□□ -2
USP41Q3LFD5 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.54□□□□□ -2
USP41Q3LFD5 AC008267.5-201ENST00000424928 265 ntBASIC2.54□□□□□ -2
USP41Q3LFD5 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.54□□□□□ -2
USP41Q3LFD5 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.54□□□□□ -2
USP41Q3LFD5 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.54□□□□□ -2
USP41Q3LFD5 AC244670.1-201ENST00000436879 112 ntBASIC2.54□□□□□ -2
USP41Q3LFD5 RPS12P2-201ENST00000439728 269 ntBASIC2.54□□□□□ -2
USP41Q3LFD5 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.54□□□□□ -2
USP41Q3LFD5 RPS29P27-201ENST00000463711 170 ntBASIC2.54□□□□□ -2
USP41Q3LFD5 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.54□□□□□ -2
USP41Q3LFD5 ACA59.1-201ENST00000515966 143 ntBASIC2.54□□□□□ -2
USP41Q3LFD5 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.54□□□□□ -2
USP41Q3LFD5 AC105245.1-201ENST00000581934 244 ntBASIC2.54□□□□□ -2
USP41Q3LFD5 RPL30P11-203ENST00000598995 310 ntBASIC2.54□□□□□ -2
USP41Q3LFD5 MIR8076-201ENST00000611401 83 ntBASIC2.54□□□□□ -2
USP41Q3LFD5 AC025253.1-201ENST00000613623 543 ntBASIC2.54□□□□□ -2
USP41Q3LFD5 AC069528.2-201ENST00000624849 1991 ntBASIC2.54□□□□□ -2
USP41Q3LFD5 Y_RNA.123-201ENST00000363338 102 ntBASIC2.53□□□□□ -2
USP41Q3LFD5 RNU6-601P-201ENST00000384540 107 ntBASIC2.53□□□□□ -2
USP41Q3LFD5 U6atac.2-201ENST00000408644 118 ntBASIC2.53□□□□□ -2
USP41Q3LFD5 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.53□□□□□ -2
USP41Q3LFD5 DAP3P1-201ENST00000441522 278 ntBASIC2.53□□□□□ -2
USP41Q3LFD5 snoU13.15-201ENST00000459407 104 ntBASIC2.53□□□□□ -2
USP41Q3LFD5 UBL5P3-201ENST00000475112 231 ntBASIC2.53□□□□□ -2
USP41Q3LFD5 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC2.53□□□□□ -2
USP41Q3LFD5 AC116337.1-201ENST00000509680 687 ntBASIC2.53□□□□□ -2
USP41Q3LFD5 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.53□□□□□ -2
USP41Q3LFD5 AC115990.1-201ENST00000526957 301 ntBASIC2.53□□□□□ -2
USP41Q3LFD5 MIR1273D-201ENST00000577266 86 ntBASIC2.53□□□□□ -2
USP41Q3LFD5 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.53□□□□□ -2
USP41Q3LFD5 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.53□□□□□ -2
USP41Q3LFD5 AL356157.2-201ENST00000605122 111 ntBASIC2.53□□□□□ -2
USP41Q3LFD5 AL159153.1-201ENST00000619688 317 ntBASIC2.53□□□□□ -2
USP41Q3LFD5 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.53□□□□□ -2
USP41Q3LFD5 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
USP41Q3LFD5 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.53□□□□□ -2
USP41Q3LFD5 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
USP41Q3LFD5 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.53□□□□□ -2.01
USP41Q3LFD5 AC135776.4-201ENST00000624300 1904 ntBASIC2.52□□□□□ -2.01
USP41Q3LFD5 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
USP41Q3LFD5 RNU6-1285P-201ENST00000363480 105 ntBASIC2.52□□□□□ -2.01
USP41Q3LFD5 RNU6-1059P-201ENST00000363752 98 ntBASIC2.52□□□□□ -2.01
USP41Q3LFD5 RNU6-1210P-201ENST00000363775 107 ntBASIC2.52□□□□□ -2.01
USP41Q3LFD5 RNU1-91P-201ENST00000364746 163 ntBASIC2.52□□□□□ -2.01
USP41Q3LFD5 U8.8-201ENST00000365399 135 ntBASIC2.52□□□□□ -2.01
USP41Q3LFD5 Y_RNA.473-201ENST00000384333 102 ntBASIC2.52□□□□□ -2.01
USP41Q3LFD5 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC2.52□□□□□ -2.01
USP41Q3LFD5 AL590135.1-201ENST00000422215 156 ntBASIC2.52□□□□□ -2.01
USP41Q3LFD5 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.52□□□□□ -2.01
USP41Q3LFD5 AC019205.3-201ENST00000424573 156 ntBASIC2.52□□□□□ -2.01
USP41Q3LFD5 RPL23AP95-201ENST00000426806 265 ntBASIC2.52□□□□□ -2.01
USP41Q3LFD5 USP9YP30-201ENST00000430729 455 ntBASIC2.52□□□□□ -2.01
USP41Q3LFD5 AL133396.1-201ENST00000432048 687 ntBASIC2.52□□□□□ -2.01
USP41Q3LFD5 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.52□□□□□ -2.01
USP41Q3LFD5 GPM6BP3-201ENST00000442797 145 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms