| TFE3 | P19532 | Y_RNA.306-201 | ENST00000365015 | 102 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | Y_RNA.312-201 | ENST00000365089 | 102 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | Y_RNA.322-201 | ENST00000365151 | 102 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | MS4A4E-202 | ENST00000398986 | 522 nt | APPRIS P1 TSL 5 BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | RNA5SP201-201 | ENST00000410316 | 124 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | Y_RNA.626-201 | ENST00000411288 | 95 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | AIMP1P2-201 | ENST00000425294 | 312 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | MTND2P29-201 | ENST00000438595 | 412 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | AL121580.1-201 | ENST00000449941 | 219 nt | TSL 3 BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | HMGN2P7-201 | ENST00000456186 | 273 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | Y_RNA.650-201 | ENST00000459002 | 102 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | AC103975.1-201 | ENST00000482506 | 483 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | RNU1-95P-201 | ENST00000516357 | 160 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | RNU1-128P-201 | ENST00000516704 | 160 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | Y_RNA.777-201 | ENST00000516982 | 102 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | AC107973.1-201 | ENST00000530249 | 576 nt | TSL 4 BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | EIF4A1P12-201 | ENST00000551910 | 141 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | AC084365.1-201 | ENST00000552470 | 310 nt | TSL 3 BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | AL512605.2-201 | ENST00000592972 | 256 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | Y_RNA.771-201 | ENST00000598668 | 102 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | Y_RNA.789-201 | ENST00000622480 | 102 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | hsa-mir-548d-1.1-201 | ENST00000636914 | 97 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | FOXP2-227 | ENST00000638397 | 240 nt | TSL 5 BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | OTUD4P1-201 | ENST00000237841 | 3067 nt | BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | PRKAA2-201 | ENST00000371244 | 9347 nt | APPRIS P2 TSL 1 (best) BASIC | 3.79 | □□□□□ -1.8 | | |
| TFE3 | P19532 | FZD3-201 | ENST00000240093 | 13736 nt | APPRIS P1 TSL 1 (best) BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | RNF38-203 | ENST00000353739 | 4945 nt | TSL 1 (best) BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | ANKRD30BP1-201 | ENST00000451052 | 2186 nt | BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | LINC00670-201 | ENST00000313495 | 2953 nt | TSL 2 BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | SNORD9-201 | ENST00000362566 | 104 nt | BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | Y_RNA.40-201 | ENST00000362645 | 93 nt | BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | RNA5SP502-201 | ENST00000362694 | 119 nt | BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | RNU6-283P-201 | ENST00000364788 | 107 nt | BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | Y_RNA.292-201 | ENST00000364904 | 97 nt | BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | RNY4P28-201 | ENST00000365281 | 93 nt | BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | Y_RNA.418-201 | ENST00000384029 | 102 nt | BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | RNU6-886P-201 | ENST00000384319 | 105 nt | BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | MIR186-201 | ENST00000384988 | 86 nt | BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | ATP2B2-IT1-201 | ENST00000440152 | 472 nt | TSL 3 BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | MRPS10P1-201 | ENST00000448483 | 130 nt | BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | RPS3P1-201 | ENST00000456781 | 192 nt | BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | RNU7-120P-201 | ENST00000459334 | 63 nt | BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | AC024405.2-202 | ENST00000532731 | 184 nt | BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | AP002392.1-201 | ENST00000537692 | 208 nt | BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | ACTG1P17-203 | ENST00000561222 | 537 nt | TSL 3 BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | AC087463.2-201 | ENST00000565943 | 472 nt | TSL 3 BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | MIR4282-201 | ENST00000583613 | 67 nt | BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | AL137843.1-201 | ENST00000605078 | 385 nt | BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | CR392039.5-201 | ENST00000623201 | 510 nt | BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | FIGNL1-201 | ENST00000356889 | 3471 nt | APPRIS P1 TSL 1 (best) BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | OR6C1-202 | ENST00000642104 | 2055 nt | APPRIS P1 BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | ZNF439-201 | ENST00000304030 | 2622 nt | APPRIS P1 TSL 1 (best) BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | TMEM38B-201 | ENST00000374688 | 3956 nt | TSL 2 BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | BLM-208 | ENST00000560509 | 3966 nt | TSL 1 (best) BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | OR9K2-202 | ENST00000641329 | 3120 nt | APPRIS P1 BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | ADGRG2-206 | ENST00000360279 | 4702 nt | TSL 1 (best) BASIC | 3.78 | □□□□□ -1.8 | | |
| TFE3 | P19532 | AC135776.4-201 | ENST00000624300 | 1904 nt | BASIC | 3.78 | □□□□□ -1.81 | | |
| TFE3 | P19532 | AC092593.1-201 | ENST00000515413 | 1815 nt | BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | TET2-204 | ENST00000413648 | 4973 nt | TSL 1 (best) BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | U3.9-201 | ENST00000363823 | 204 nt | BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | RNA5SP42-201 | ENST00000364278 | 115 nt | BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | SNORA5A-201 | ENST00000384111 | 134 nt | BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | RNU1-57P-201 | ENST00000384491 | 166 nt | BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | MIR554-201 | ENST00000384874 | 96 nt | BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | MIR549A-201 | ENST00000385268 | 96 nt | BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | RNA5SP475-201 | ENST00000410568 | 110 nt | BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | RPL19P1-201 | ENST00000411635 | 428 nt | BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | ELOCP21-201 | ENST00000412558 | 336 nt | BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | AL590399.1-203 | ENST00000412631 | 256 nt | TSL 5 BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | AL365496.1-201 | ENST00000426885 | 215 nt | BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | GOT2P5-201 | ENST00000433995 | 546 nt | BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | AL023693.1-201 | ENST00000434255 | 216 nt | TSL 5 BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | AC069023.1-201 | ENST00000442231 | 221 nt | TSL 3 BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | RPL23AP3-201 | ENST00000453844 | 468 nt | BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | AP001324.2-201 | ENST00000461163 | 319 nt | BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | AL121594.1-201 | ENST00000475906 | 575 nt | BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | AC026784.1-201 | ENST00000507986 | 352 nt | BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | AC104619.4-201 | ENST00000510773 | 249 nt | BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | AL157911.1-202 | ENST00000554123 | 502 nt | TSL 3 BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | AP005264.4-201 | ENST00000592203 | 422 nt | TSL 5 BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | AD001527.1-201 | ENST00000604228 | 379 nt | TSL 5 BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | MSANTD4-206 | ENST00000617528 | 508 nt | TSL 5 BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | AC244205.2-202 | ENST00000635781 | 342 nt | BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | MBD5-212 | ENST00000627651 | 5610 nt | TSL 5 BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | EPC1-203 | ENST00000375110 | 3909 nt | TSL 1 (best) BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | AC026241.1-201 | ENST00000517873 | 2142 nt | BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | MAPK10-372 | ENST00000641954 | 3413 nt | BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | KCNT2-206 | ENST00000609185 | 3622 nt | TSL 1 (best) BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | ZBTB37-201 | ENST00000367701 | 19128 nt | APPRIS P1 TSL 1 (best) BASIC | 3.77 | □□□□□ -1.81 | | |
| TFE3 | P19532 | RMDN2-203 | ENST00000402091 | 1973 nt | TSL 2 BASIC | 3.76 | □□□□□ -1.81 | | |
| TFE3 | P19532 | FASTKD1-205 | ENST00000453929 | 2791 nt | TSL 2 BASIC | 3.76 | □□□□□ -1.81 | | |
| TFE3 | P19532 | RAD17-202 | ENST00000305138 | 3164 nt | TSL 1 (best) BASIC | 3.76 | □□□□□ -1.81 | | |
| TFE3 | P19532 | ZNF99-201 | ENST00000397104 | 3114 nt | APPRIS P1 TSL 5 BASIC | 3.76 | □□□□□ -1.81 | | |
| TFE3 | P19532 | EFCAB3-202 | ENST00000450662 | 1694 nt | TSL 5 BASIC | 3.76 | □□□□□ -1.81 | | |
| TFE3 | P19532 | MIR423-201 | ENST00000362201 | 94 nt | BASIC | 3.76 | □□□□□ -1.81 | | |
| TFE3 | P19532 | MIR767-201 | ENST00000390228 | 109 nt | BASIC | 3.76 | □□□□□ -1.81 | | |
| TFE3 | P19532 | RNU6ATAC-201 | ENST00000408749 | 126 nt | BASIC | 3.76 | □□□□□ -1.81 | | |
| TFE3 | P19532 | ATP5A1P2-201 | ENST00000412323 | 255 nt | BASIC | 3.76 | □□□□□ -1.81 | | |
| TFE3 | P19532 | GPC5-AS1-201 | ENST00000419288 | 393 nt | TSL 3 BASIC | 3.76 | □□□□□ -1.81 | | |
| TFE3 | P19532 | AL133547.1-201 | ENST00000448546 | 220 nt | BASIC | 3.76 | □□□□□ -1.81 | | |