Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Syne4Q8CII8 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Syne4Q8CII8 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC18.21■□□□□ 0.51
Syne4Q8CII8 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
Syne4Q8CII8 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Syne4Q8CII8 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Syne4Q8CII8 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Syne4Q8CII8 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Syne4Q8CII8 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Syne4Q8CII8 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
Syne4Q8CII8 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Syne4Q8CII8 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC18.2■□□□□ 0.5
Syne4Q8CII8 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Syne4Q8CII8 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Syne4Q8CII8 AC124549.3-201ENSMUST00000225541 367 ntBASIC18.2■□□□□ 0.5
Syne4Q8CII8 Gm8396-201ENSMUST00000057361 823 ntBASIC18.2■□□□□ 0.5
Syne4Q8CII8 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Syne4Q8CII8 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Syne4Q8CII8 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Syne4Q8CII8 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Syne4Q8CII8 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Syne4Q8CII8 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC18.2■□□□□ 0.5
Syne4Q8CII8 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Syne4Q8CII8 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Syne4Q8CII8 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Syne4Q8CII8 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Syne4Q8CII8 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Syne4Q8CII8 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Syne4Q8CII8 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Syne4Q8CII8 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Syne4Q8CII8 Gm11185-201ENSMUST00000117732 1007 ntBASIC18.19■□□□□ 0.5
Syne4Q8CII8 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Syne4Q8CII8 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC18.19■□□□□ 0.5
Syne4Q8CII8 AC159114.1-201ENSMUST00000220349 266 ntBASIC18.19■□□□□ 0.5
Syne4Q8CII8 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Syne4Q8CII8 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Syne4Q8CII8 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Syne4Q8CII8 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
Syne4Q8CII8 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Syne4Q8CII8 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Syne4Q8CII8 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC18.18■□□□□ 0.5
Syne4Q8CII8 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Syne4Q8CII8 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Syne4Q8CII8 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Syne4Q8CII8 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Syne4Q8CII8 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Syne4Q8CII8 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Syne4Q8CII8 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Syne4Q8CII8 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Syne4Q8CII8 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Syne4Q8CII8 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Syne4Q8CII8 Gm8344-201ENSMUST00000119813 856 ntBASIC18.18■□□□□ 0.5
Syne4Q8CII8 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC18.18■□□□□ 0.5
Syne4Q8CII8 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
Syne4Q8CII8 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Syne4Q8CII8 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC18.18■□□□□ 0.5
Syne4Q8CII8 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC18.18■□□□□ 0.5
Syne4Q8CII8 AC093926.2-201ENSMUST00000214468 1228 ntBASIC18.18■□□□□ 0.5
Syne4Q8CII8 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Syne4Q8CII8 AC139382.1-201ENSMUST00000221402 498 ntBASIC18.18■□□□□ 0.5
Syne4Q8CII8 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Syne4Q8CII8 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Syne4Q8CII8 AC147366.1-201ENSMUST00000227671 852 ntBASIC18.18■□□□□ 0.5
Syne4Q8CII8 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Syne4Q8CII8 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC18.18■□□□□ 0.5
Syne4Q8CII8 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Syne4Q8CII8 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Syne4Q8CII8 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Syne4Q8CII8 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Syne4Q8CII8 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Syne4Q8CII8 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Syne4Q8CII8 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Syne4Q8CII8 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Syne4Q8CII8 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Syne4Q8CII8 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Syne4Q8CII8 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Syne4Q8CII8 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Syne4Q8CII8 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Syne4Q8CII8 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Syne4Q8CII8 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Syne4Q8CII8 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Syne4Q8CII8 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC18.17■□□□□ 0.5
Syne4Q8CII8 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC18.17■□□□□ 0.5
Syne4Q8CII8 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Syne4Q8CII8 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC18.17■□□□□ 0.5
Syne4Q8CII8 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Syne4Q8CII8 AC154572.2-201ENSMUST00000225105 997 ntBASIC18.17■□□□□ 0.5
Syne4Q8CII8 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Syne4Q8CII8 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Syne4Q8CII8 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Syne4Q8CII8 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Syne4Q8CII8 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Syne4Q8CII8 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Syne4Q8CII8 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Syne4Q8CII8 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Syne4Q8CII8 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Syne4Q8CII8 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Syne4Q8CII8 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Syne4Q8CII8 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Syne4Q8CII8 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms