Protein–RNA interactions for Protein: Q8C120

Sh3rf3, SH3 domain-containing RING finger protein 3, mousemouse

Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf3Q8C120 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Sh3rf3Q8C120 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Sh3rf3Q8C120 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Sh3rf3Q8C120 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Sh3rf3Q8C120 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Sh3rf3Q8C120 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Sh3rf3Q8C120 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 AA414768-201ENSMUST00000121924 1257 ntBASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Gm17808-201ENSMUST00000200859 894 ntBASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf3Q8C120 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Gm29518-201ENSMUST00000190858 372 ntBASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf3Q8C120 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 AC093043.3-201ENSMUST00000226531 2273 ntBASIC16.8■□□□□ 0.28
Sh3rf3Q8C120 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf3Q8C120 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf3Q8C120 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf3Q8C120 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf3Q8C120 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf3Q8C120 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC16.79■□□□□ 0.28
Sh3rf3Q8C120 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC16.79■□□□□ 0.28
Sh3rf3Q8C120 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC16.79■□□□□ 0.28
Sh3rf3Q8C120 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
Sh3rf3Q8C120 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Sh3rf3Q8C120 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf3Q8C120 Gm11950-201ENSMUST00000121615 838 ntBASIC16.79■□□□□ 0.28
Sh3rf3Q8C120 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC16.79■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms