Protein–RNA interactions for Protein: Q8BX13

Ube3d, E3 ubiquitin-protein ligase E3D, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3dQ8BX13 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ube3dQ8BX13 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ube3dQ8BX13 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3dQ8BX13 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3dQ8BX13 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3dQ8BX13 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.12
Ube3dQ8BX13 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3dQ8BX13 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3dQ8BX13 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC14.33□□□□□ -0.12
Ube3dQ8BX13 AC130713.1-201ENSMUST00000228853 1096 ntBASIC14.33□□□□□ -0.12
Ube3dQ8BX13 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3dQ8BX13 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Ube3dQ8BX13 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3dQ8BX13 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3dQ8BX13 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3dQ8BX13 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3dQ8BX13 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3dQ8BX13 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3dQ8BX13 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3dQ8BX13 Gm37812-201ENSMUST00000195216 2475 ntBASIC14.33□□□□□ -0.12
Ube3dQ8BX13 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube3dQ8BX13 Gm43072-201ENSMUST00000200283 1671 ntBASIC14.33□□□□□ -0.12
Ube3dQ8BX13 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
Ube3dQ8BX13 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ube3dQ8BX13 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Gm13186-201ENSMUST00000118031 316 ntBASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Gm11336-201ENSMUST00000118168 334 ntBASIC14.3□□□□□ -0.12
Ube3dQ8BX13 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC14.3□□□□□ -0.12
Ube3dQ8BX13 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 57.7 ms