Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC15.67■□□□□ 0.1
Ubfd1Q78JW9 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ubfd1Q78JW9 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ubfd1Q78JW9 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ubfd1Q78JW9 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ubfd1Q78JW9 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Ubfd1Q78JW9 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Ubfd1Q78JW9 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ubfd1Q78JW9 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ubfd1Q78JW9 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ubfd1Q78JW9 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ubfd1Q78JW9 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
Ubfd1Q78JW9 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ubfd1Q78JW9 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 Gm10060-201ENSMUST00000212002 111 ntBASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ubfd1Q78JW9 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Gm8097-201ENSMUST00000117903 829 ntBASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Gm2651-201ENSMUST00000203560 838 ntBASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Gm6443-201ENSMUST00000203599 874 ntBASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Gm45412-201ENSMUST00000210217 2275 ntBASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ubfd1Q78JW9 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 Gm25990-201ENSMUST00000102440 86 ntBASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ubfd1Q78JW9 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC15.64■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 64.7 ms