Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Gm17661-201ENSMUST00000170317 270 ntBASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Gm37025-201ENSMUST00000195159 829 ntBASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Sh3rf1Q69ZI1 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC16.37■□□□□ 0.21
Sh3rf1Q69ZI1 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
Sh3rf1Q69ZI1 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Sh3rf1Q69ZI1 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Sh3rf1Q69ZI1 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Sh3rf1Q69ZI1 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Sh3rf1Q69ZI1 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Sh3rf1Q69ZI1 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Sh3rf1Q69ZI1 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Sh3rf1Q69ZI1 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Sh3rf1Q69ZI1 Gm7213-201ENSMUST00000215977 950 ntBASIC16.37■□□□□ 0.21
Sh3rf1Q69ZI1 AC154471.1-201ENSMUST00000224418 436 ntBASIC16.37■□□□□ 0.21
Sh3rf1Q69ZI1 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Sh3rf1Q69ZI1 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Sh3rf1Q69ZI1 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Sh3rf1Q69ZI1 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Sh3rf1Q69ZI1 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Sh3rf1Q69ZI1 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Sh3rf1Q69ZI1 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Sh3rf1Q69ZI1 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC16.37■□□□□ 0.21
Sh3rf1Q69ZI1 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC16.37■□□□□ 0.21
Sh3rf1Q69ZI1 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Sh3rf1Q69ZI1 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Sh3rf1Q69ZI1 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Sh3rf1Q69ZI1 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC16.36■□□□□ 0.21
Sh3rf1Q69ZI1 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Sh3rf1Q69ZI1 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Sh3rf1Q69ZI1 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Sh3rf1Q69ZI1 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Sh3rf1Q69ZI1 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Sh3rf1Q69ZI1 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Sh3rf1Q69ZI1 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
Sh3rf1Q69ZI1 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Sh3rf1Q69ZI1 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Sh3rf1Q69ZI1 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Sh3rf1Q69ZI1 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Sh3rf1Q69ZI1 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Sh3rf1Q69ZI1 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC16.36■□□□□ 0.21
Sh3rf1Q69ZI1 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Sh3rf1Q69ZI1 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Sh3rf1Q69ZI1 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Sh3rf1Q69ZI1 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Sh3rf1Q69ZI1 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Sh3rf1Q69ZI1 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Sh3rf1Q69ZI1 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC16.35■□□□□ 0.21
Sh3rf1Q69ZI1 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Sh3rf1Q69ZI1 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Sh3rf1Q69ZI1 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Sh3rf1Q69ZI1 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Sh3rf1Q69ZI1 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Sh3rf1Q69ZI1 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Sh3rf1Q69ZI1 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Sh3rf1Q69ZI1 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
Sh3rf1Q69ZI1 Mir1668-201ENSMUST00000184114 107 ntBASIC16.35■□□□□ 0.21
Sh3rf1Q69ZI1 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Sh3rf1Q69ZI1 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC16.35■□□□□ 0.21
Sh3rf1Q69ZI1 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC16.35■□□□□ 0.21
Sh3rf1Q69ZI1 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Sh3rf1Q69ZI1 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
Sh3rf1Q69ZI1 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Sh3rf1Q69ZI1 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Sh3rf1Q69ZI1 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
Sh3rf1Q69ZI1 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Sh3rf1Q69ZI1 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC16.34■□□□□ 0.21
Sh3rf1Q69ZI1 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Sh3rf1Q69ZI1 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Sh3rf1Q69ZI1 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Sh3rf1Q69ZI1 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Sh3rf1Q69ZI1 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Sh3rf1Q69ZI1 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Sh3rf1Q69ZI1 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC16.34■□□□□ 0.21
Sh3rf1Q69ZI1 Gm27000-201ENSMUST00000182943 842 ntBASIC16.34■□□□□ 0.21
Sh3rf1Q69ZI1 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC16.34■□□□□ 0.21
Sh3rf1Q69ZI1 Gm5587-201ENSMUST00000206270 674 ntBASIC16.34■□□□□ 0.21
Sh3rf1Q69ZI1 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Sh3rf1Q69ZI1 Il3ra-202ENSMUST00000223589 738 ntBASIC16.34■□□□□ 0.21
Sh3rf1Q69ZI1 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC16.34■□□□□ 0.21
Sh3rf1Q69ZI1 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC16.34■□□□□ 0.21
Sh3rf1Q69ZI1 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
Sh3rf1Q69ZI1 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Sh3rf1Q69ZI1 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Sh3rf1Q69ZI1 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms