Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC17.78■□□□□ 0.44
CtcfQ61164 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CtcfQ61164 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CtcfQ61164 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CtcfQ61164 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CtcfQ61164 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CtcfQ61164 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CtcfQ61164 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CtcfQ61164 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CtcfQ61164 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CtcfQ61164 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CtcfQ61164 AC153526.5-201ENSMUST00000218661 2147 ntBASIC17.77■□□□□ 0.44
CtcfQ61164 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CtcfQ61164 AC154412.1-201ENSMUST00000226540 2786 ntBASIC17.77■□□□□ 0.44
CtcfQ61164 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
CtcfQ61164 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CtcfQ61164 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CtcfQ61164 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CtcfQ61164 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CtcfQ61164 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CtcfQ61164 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CtcfQ61164 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CtcfQ61164 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC17.77■□□□□ 0.44
CtcfQ61164 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CtcfQ61164 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CtcfQ61164 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CtcfQ61164 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CtcfQ61164 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.43
CtcfQ61164 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CtcfQ61164 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CtcfQ61164 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
CtcfQ61164 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC17.77■□□□□ 0.43
CtcfQ61164 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CtcfQ61164 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
CtcfQ61164 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CtcfQ61164 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CtcfQ61164 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CtcfQ61164 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CtcfQ61164 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC17.76■□□□□ 0.43
CtcfQ61164 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CtcfQ61164 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CtcfQ61164 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CtcfQ61164 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CtcfQ61164 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CtcfQ61164 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CtcfQ61164 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CtcfQ61164 Ntrk2-205ENSMUST00000224402 2284 ntBASIC17.76■□□□□ 0.43
CtcfQ61164 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC17.76■□□□□ 0.43
CtcfQ61164 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CtcfQ61164 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CtcfQ61164 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CtcfQ61164 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CtcfQ61164 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CtcfQ61164 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC17.76■□□□□ 0.43
CtcfQ61164 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CtcfQ61164 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CtcfQ61164 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CtcfQ61164 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CtcfQ61164 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CtcfQ61164 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
CtcfQ61164 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CtcfQ61164 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CtcfQ61164 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CtcfQ61164 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CtcfQ61164 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
CtcfQ61164 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC17.75■□□□□ 0.43
CtcfQ61164 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CtcfQ61164 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CtcfQ61164 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC17.75■□□□□ 0.43
CtcfQ61164 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CtcfQ61164 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CtcfQ61164 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
CtcfQ61164 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CtcfQ61164 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CtcfQ61164 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CtcfQ61164 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
CtcfQ61164 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CtcfQ61164 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CtcfQ61164 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CtcfQ61164 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CtcfQ61164 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CtcfQ61164 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CtcfQ61164 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CtcfQ61164 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CtcfQ61164 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CtcfQ61164 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CtcfQ61164 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CtcfQ61164 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CtcfQ61164 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC17.74■□□□□ 0.43
CtcfQ61164 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
CtcfQ61164 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CtcfQ61164 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CtcfQ61164 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC17.74■□□□□ 0.43
CtcfQ61164 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CtcfQ61164 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC17.74■□□□□ 0.43
CtcfQ61164 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CtcfQ61164 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CtcfQ61164 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC17.73■□□□□ 0.43
CtcfQ61164 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CtcfQ61164 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 52 ms