Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Usp28Q5I043 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp28Q5I043 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Usp28Q5I043 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC18.33■□□□□ 0.52
Usp28Q5I043 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp28Q5I043 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp28Q5I043 Gm6858-201ENSMUST00000208582 1468 ntBASIC18.33■□□□□ 0.52
Usp28Q5I043 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp28Q5I043 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp28Q5I043 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp28Q5I043 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp28Q5I043 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp28Q5I043 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Usp28Q5I043 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp28Q5I043 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC18.32■□□□□ 0.52
Usp28Q5I043 AC134329.2-201ENSMUST00000217897 428 ntBASIC18.32■□□□□ 0.52
Usp28Q5I043 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp28Q5I043 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp28Q5I043 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp28Q5I043 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Usp28Q5I043 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp28Q5I043 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Usp28Q5I043 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp28Q5I043 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Usp28Q5I043 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp28Q5I043 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Usp28Q5I043 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp28Q5I043 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Usp28Q5I043 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp28Q5I043 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Usp28Q5I043 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp28Q5I043 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC18.31■□□□□ 0.52
Usp28Q5I043 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp28Q5I043 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp28Q5I043 Gm42901-201ENSMUST00000197735 3171 ntBASIC18.31■□□□□ 0.52
Usp28Q5I043 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp28Q5I043 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC18.31■□□□□ 0.52
Usp28Q5I043 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp28Q5I043 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Usp28Q5I043 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp28Q5I043 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Usp28Q5I043 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
Usp28Q5I043 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC18.31■□□□□ 0.52
Usp28Q5I043 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp28Q5I043 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Usp28Q5I043 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp28Q5I043 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Usp28Q5I043 Gm38327-201ENSMUST00000195852 1755 ntBASIC18.31■□□□□ 0.52
Usp28Q5I043 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp28Q5I043 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp28Q5I043 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp28Q5I043 AC132265.1-201ENSMUST00000219233 1665 ntBASIC18.31■□□□□ 0.52
Usp28Q5I043 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Usp28Q5I043 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp28Q5I043 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Usp28Q5I043 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Usp28Q5I043 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp28Q5I043 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp28Q5I043 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC18.3■□□□□ 0.52
Usp28Q5I043 AC153881.2-201ENSMUST00000214877 204 ntBASIC18.3■□□□□ 0.52
Usp28Q5I043 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp28Q5I043 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp28Q5I043 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Usp28Q5I043 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp28Q5I043 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp28Q5I043 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp28Q5I043 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp28Q5I043 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Usp28Q5I043 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp28Q5I043 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp28Q5I043 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC18.29■□□□□ 0.52
Usp28Q5I043 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Usp28Q5I043 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp28Q5I043 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp28Q5I043 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC18.29■□□□□ 0.52
Usp28Q5I043 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp28Q5I043 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp28Q5I043 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Usp28Q5I043 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC18.29■□□□□ 0.52
Usp28Q5I043 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Usp28Q5I043 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp28Q5I043 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Usp28Q5I043 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC18.29■□□□□ 0.52
Usp28Q5I043 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Usp28Q5I043 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC18.29■□□□□ 0.52
Usp28Q5I043 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp28Q5I043 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp28Q5I043 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Usp28Q5I043 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp28Q5I043 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp28Q5I043 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp28Q5I043 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC18.29■□□□□ 0.52
Usp28Q5I043 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp28Q5I043 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Usp28Q5I043 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC18.29■□□□□ 0.52
Usp28Q5I043 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp28Q5I043 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp28Q5I043 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC18.29■□□□□ 0.52
Usp28Q5I043 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp28Q5I043 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 49.7 ms