Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ddb1Q3U1J4 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Ddb1Q3U1J4 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ddb1Q3U1J4 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ddb1Q3U1J4 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ddb1Q3U1J4 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ddb1Q3U1J4 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Ddb1Q3U1J4 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ddb1Q3U1J4 Zcchc6-207ENSMUST00000225576 2499 ntBASIC20.42■□□□□ 0.86
Ddb1Q3U1J4 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ddb1Q3U1J4 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC20.42■□□□□ 0.86
Ddb1Q3U1J4 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC20.42■□□□□ 0.86
Ddb1Q3U1J4 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ddb1Q3U1J4 Mir6990-201ENSMUST00000183724 91 ntBASIC20.42■□□□□ 0.86
Ddb1Q3U1J4 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ddb1Q3U1J4 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ddb1Q3U1J4 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ddb1Q3U1J4 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ddb1Q3U1J4 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Ddb1Q3U1J4 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ddb1Q3U1J4 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC20.42■□□□□ 0.86
Ddb1Q3U1J4 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC20.42■□□□□ 0.86
Ddb1Q3U1J4 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ddb1Q3U1J4 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ddb1Q3U1J4 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ddb1Q3U1J4 Gm38318-201ENSMUST00000195769 1706 ntBASIC20.41■□□□□ 0.86
Ddb1Q3U1J4 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ddb1Q3U1J4 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC20.41■□□□□ 0.86
Ddb1Q3U1J4 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ddb1Q3U1J4 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
Ddb1Q3U1J4 Gm6226-201ENSMUST00000117765 1146 ntBASIC20.41■□□□□ 0.86
Ddb1Q3U1J4 Gm43474-201ENSMUST00000196415 774 ntBASIC20.41■□□□□ 0.86
Ddb1Q3U1J4 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC20.41■□□□□ 0.86
Ddb1Q3U1J4 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Ddb1Q3U1J4 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ddb1Q3U1J4 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC20.41■□□□□ 0.86
Ddb1Q3U1J4 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Ddb1Q3U1J4 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ddb1Q3U1J4 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
Ddb1Q3U1J4 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ddb1Q3U1J4 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ddb1Q3U1J4 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Ddb1Q3U1J4 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Ddb1Q3U1J4 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ddb1Q3U1J4 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Ddb1Q3U1J4 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
Ddb1Q3U1J4 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ddb1Q3U1J4 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ddb1Q3U1J4 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ddb1Q3U1J4 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ddb1Q3U1J4 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Ddb1Q3U1J4 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Ddb1Q3U1J4 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ddb1Q3U1J4 Gm13294-201ENSMUST00000121757 1330 ntBASIC20.4■□□□□ 0.86
Ddb1Q3U1J4 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC20.4■□□□□ 0.86
Ddb1Q3U1J4 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC20.4■□□□□ 0.86
Ddb1Q3U1J4 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Ddb1Q3U1J4 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Ddb1Q3U1J4 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC20.4■□□□□ 0.86
Ddb1Q3U1J4 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
Ddb1Q3U1J4 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ddb1Q3U1J4 AC140397.2-201ENSMUST00000224213 834 ntBASIC20.4■□□□□ 0.86
Ddb1Q3U1J4 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ddb1Q3U1J4 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ddb1Q3U1J4 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Ddb1Q3U1J4 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ddb1Q3U1J4 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Ddb1Q3U1J4 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Ddb1Q3U1J4 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC20.39■□□□□ 0.86
Ddb1Q3U1J4 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
Ddb1Q3U1J4 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ddb1Q3U1J4 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
Ddb1Q3U1J4 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Ddb1Q3U1J4 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Ddb1Q3U1J4 Gm5745-201ENSMUST00000183748 313 ntBASIC20.39■□□□□ 0.85
Ddb1Q3U1J4 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC20.39■□□□□ 0.85
Ddb1Q3U1J4 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC20.39■□□□□ 0.85
Ddb1Q3U1J4 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC20.39■□□□□ 0.85
Ddb1Q3U1J4 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC20.39■□□□□ 0.85
Ddb1Q3U1J4 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ddb1Q3U1J4 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Ddb1Q3U1J4 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Ddb1Q3U1J4 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Ddb1Q3U1J4 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Ddb1Q3U1J4 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ddb1Q3U1J4 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Ddb1Q3U1J4 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ddb1Q3U1J4 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ddb1Q3U1J4 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ddb1Q3U1J4 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ddb1Q3U1J4 Dmtn-207ENSMUST00000228001 2437 ntBASIC20.38■□□□□ 0.85
Ddb1Q3U1J4 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ddb1Q3U1J4 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Ddb1Q3U1J4 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ddb1Q3U1J4 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Ddb1Q3U1J4 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ddb1Q3U1J4 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Ddb1Q3U1J4 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Ddb1Q3U1J4 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ddb1Q3U1J4 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms