Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Hmgb1P63158 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Hmgb1P63158 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Hmgb1P63158 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Hmgb1P63158 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Hmgb1P63158 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC17.75■□□□□ 0.43
Hmgb1P63158 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Hmgb1P63158 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Hmgb1P63158 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Hmgb1P63158 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Hmgb1P63158 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC17.75■□□□□ 0.43
Hmgb1P63158 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Hmgb1P63158 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Hmgb1P63158 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC17.75■□□□□ 0.43
Hmgb1P63158 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb1P63158 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC17.74■□□□□ 0.43
Hmgb1P63158 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb1P63158 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb1P63158 Gm8668-201ENSMUST00000120559 1447 ntBASIC17.74■□□□□ 0.43
Hmgb1P63158 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb1P63158 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb1P63158 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb1P63158 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb1P63158 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb1P63158 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb1P63158 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Hmgb1P63158 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb1P63158 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb1P63158 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
Hmgb1P63158 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC17.74■□□□□ 0.43
Hmgb1P63158 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC17.74■□□□□ 0.43
Hmgb1P63158 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb1P63158 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC17.74■□□□□ 0.43
Hmgb1P63158 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb1P63158 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb1P63158 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb1P63158 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb1P63158 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
Hmgb1P63158 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb1P63158 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb1P63158 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC17.74■□□□□ 0.43
Hmgb1P63158 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb1P63158 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb1P63158 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb1P63158 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb1P63158 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgb1P63158 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgb1P63158 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgb1P63158 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgb1P63158 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgb1P63158 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgb1P63158 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC17.73■□□□□ 0.43
Hmgb1P63158 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC17.73■□□□□ 0.43
Hmgb1P63158 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC17.73■□□□□ 0.43
Hmgb1P63158 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
Hmgb1P63158 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC17.73■□□□□ 0.43
Hmgb1P63158 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
Hmgb1P63158 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgb1P63158 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgb1P63158 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgb1P63158 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC17.73■□□□□ 0.43
Hmgb1P63158 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC17.73■□□□□ 0.43
Hmgb1P63158 Ntrk2-205ENSMUST00000224402 2284 ntBASIC17.73■□□□□ 0.43
Hmgb1P63158 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgb1P63158 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC17.73■□□□□ 0.43
Hmgb1P63158 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgb1P63158 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgb1P63158 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgb1P63158 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgb1P63158 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgb1P63158 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgb1P63158 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgb1P63158 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgb1P63158 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC17.72■□□□□ 0.43
Hmgb1P63158 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgb1P63158 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC17.72■□□□□ 0.43
Hmgb1P63158 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgb1P63158 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgb1P63158 Rbfox2-206ENSMUST00000227314 1810 ntBASIC17.72■□□□□ 0.43
Hmgb1P63158 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgb1P63158 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgb1P63158 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgb1P63158 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC17.71■□□□□ 0.43
Hmgb1P63158 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hmgb1P63158 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Hmgb1P63158 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hmgb1P63158 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hmgb1P63158 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Hmgb1P63158 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hmgb1P63158 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hmgb1P63158 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hmgb1P63158 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC17.71■□□□□ 0.43
Hmgb1P63158 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC17.71■□□□□ 0.43
Hmgb1P63158 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Hmgb1P63158 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Hmgb1P63158 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC17.71■□□□□ 0.43
Hmgb1P63158 Gm21559-201ENSMUST00000220638 855 ntBASIC17.71■□□□□ 0.43
Hmgb1P63158 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC17.71■□□□□ 0.43
Hmgb1P63158 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hmgb1P63158 Gm8587-201ENSMUST00000076538 843 ntBASIC17.71■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms