Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp4P35123 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp4P35123 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp4P35123 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Usp4P35123 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp4P35123 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Usp4P35123 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp4P35123 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp4P35123 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp4P35123 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp4P35123 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Usp4P35123 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp4P35123 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Usp4P35123 Gfra2-202ENSMUST00000227633 1480 ntBASIC16.92■□□□□ 0.3
Usp4P35123 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Usp4P35123 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Usp4P35123 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp4P35123 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Usp4P35123 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Usp4P35123 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp4P35123 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
Usp4P35123 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC16.91■□□□□ 0.3
Usp4P35123 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp4P35123 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp4P35123 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp4P35123 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp4P35123 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC16.91■□□□□ 0.3
Usp4P35123 Gm45058-201ENSMUST00000205810 766 ntBASIC16.91■□□□□ 0.3
Usp4P35123 AC120002.2-201ENSMUST00000220205 773 ntBASIC16.91■□□□□ 0.3
Usp4P35123 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp4P35123 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp4P35123 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Usp4P35123 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp4P35123 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp4P35123 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
Usp4P35123 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp4P35123 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Usp4P35123 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Usp4P35123 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Usp4P35123 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp4P35123 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp4P35123 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Usp4P35123 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp4P35123 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp4P35123 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp4P35123 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Usp4P35123 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Usp4P35123 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Usp4P35123 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp4P35123 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp4P35123 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp4P35123 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp4P35123 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Usp4P35123 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp4P35123 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp4P35123 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp4P35123 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Usp4P35123 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Usp4P35123 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Usp4P35123 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Usp4P35123 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
Usp4P35123 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
Usp4P35123 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Usp4P35123 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp4P35123 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp4P35123 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
Usp4P35123 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Usp4P35123 Gm7638-201ENSMUST00000121348 967 ntBASIC16.89■□□□□ 0.29
Usp4P35123 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Usp4P35123 Gm18958-201ENSMUST00000174258 762 ntBASIC16.89■□□□□ 0.29
Usp4P35123 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC16.89■□□□□ 0.29
Usp4P35123 Gm2274-201ENSMUST00000184539 609 ntBASIC16.89■□□□□ 0.29
Usp4P35123 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
Usp4P35123 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
Usp4P35123 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC16.89■□□□□ 0.29
Usp4P35123 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Usp4P35123 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC16.89■□□□□ 0.29
Usp4P35123 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp4P35123 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp4P35123 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp4P35123 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp4P35123 App-207ENSMUST00000227737 2827 ntBASIC16.89■□□□□ 0.29
Usp4P35123 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp4P35123 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp4P35123 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp4P35123 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC16.89■□□□□ 0.29
Usp4P35123 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Usp4P35123 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Usp4P35123 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Usp4P35123 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp4P35123 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp4P35123 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp4P35123 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp4P35123 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp4P35123 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Usp4P35123 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Usp4P35123 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Usp4P35123 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC16.88■□□□□ 0.29
Usp4P35123 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC16.88■□□□□ 0.29
Usp4P35123 Gm23634-201ENSMUST00000175071 91 ntBASIC16.88■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms