Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Col1a1P11087 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col1a1P11087 Gm13332-201ENSMUST00000120451 1398 ntBASIC18.77■□□□□ 0.6
Col1a1P11087 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col1a1P11087 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col1a1P11087 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col1a1P11087 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC18.77■□□□□ 0.6
Col1a1P11087 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col1a1P11087 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col1a1P11087 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col1a1P11087 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col1a1P11087 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col1a1P11087 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC18.77■□□□□ 0.6
Col1a1P11087 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col1a1P11087 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Col1a1P11087 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Col1a1P11087 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC18.77■□□□□ 0.59
Col1a1P11087 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col1a1P11087 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col1a1P11087 Gm27301-201ENSMUST00000184012 127 ntBASIC18.77■□□□□ 0.59
Col1a1P11087 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col1a1P11087 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC18.77■□□□□ 0.59
Col1a1P11087 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col1a1P11087 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col1a1P11087 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col1a1P11087 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Col1a1P11087 Gm13294-201ENSMUST00000121757 1330 ntBASIC18.77■□□□□ 0.59
Col1a1P11087 Gm43294-201ENSMUST00000202850 2490 ntBASIC18.77■□□□□ 0.59
Col1a1P11087 Gm38318-201ENSMUST00000195769 1706 ntBASIC18.76■□□□□ 0.59
Col1a1P11087 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col1a1P11087 Nrn1-204ENSMUST00000224323 1779 ntBASIC18.76■□□□□ 0.59
Col1a1P11087 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Col1a1P11087 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col1a1P11087 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Col1a1P11087 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col1a1P11087 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col1a1P11087 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col1a1P11087 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col1a1P11087 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col1a1P11087 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col1a1P11087 Gm44335-201ENSMUST00000196879 141 ntBASIC18.76■□□□□ 0.59
Col1a1P11087 Gm44297-201ENSMUST00000198304 141 ntBASIC18.76■□□□□ 0.59
Col1a1P11087 Gm44346-201ENSMUST00000198851 141 ntBASIC18.76■□□□□ 0.59
Col1a1P11087 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Col1a1P11087 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col1a1P11087 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col1a1P11087 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col1a1P11087 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC18.76■□□□□ 0.59
Col1a1P11087 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col1a1P11087 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col1a1P11087 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col1a1P11087 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col1a1P11087 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col1a1P11087 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col1a1P11087 Gm36858-201ENSMUST00000194501 2391 ntBASIC18.75■□□□□ 0.59
Col1a1P11087 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col1a1P11087 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col1a1P11087 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC18.75■□□□□ 0.59
Col1a1P11087 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC18.75■□□□□ 0.59
Col1a1P11087 Gm6598-201ENSMUST00000202719 2615 ntBASIC18.75■□□□□ 0.59
Col1a1P11087 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col1a1P11087 Gm12892-201ENSMUST00000117367 1146 ntBASIC18.75■□□□□ 0.59
Col1a1P11087 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col1a1P11087 Gm19164-201ENSMUST00000210667 640 ntBASIC18.75■□□□□ 0.59
Col1a1P11087 AC158538.2-201ENSMUST00000225455 906 ntBASIC18.75■□□□□ 0.59
Col1a1P11087 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Col1a1P11087 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col1a1P11087 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col1a1P11087 Gm13127-201ENSMUST00000118978 1389 ntBASIC18.75■□□□□ 0.59
Col1a1P11087 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col1a1P11087 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col1a1P11087 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Col1a1P11087 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col1a1P11087 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Col1a1P11087 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col1a1P11087 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Col1a1P11087 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col1a1P11087 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC18.74■□□□□ 0.59
Col1a1P11087 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col1a1P11087 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col1a1P11087 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Col1a1P11087 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC18.74■□□□□ 0.59
Col1a1P11087 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col1a1P11087 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col1a1P11087 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col1a1P11087 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC18.74■□□□□ 0.59
Col1a1P11087 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col1a1P11087 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col1a1P11087 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col1a1P11087 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col1a1P11087 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col1a1P11087 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Col1a1P11087 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col1a1P11087 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col1a1P11087 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col1a1P11087 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Col1a1P11087 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col1a1P11087 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col1a1P11087 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Col1a1P11087 Gm11745-201ENSMUST00000121669 448 ntBASIC18.73■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms