Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Hoxd3P09027 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Gm15743-202ENSMUST00000182690 1901 ntBASIC12.53□□□□□ -0.4
Hoxd3P09027 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Hoxd3P09027 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Hoxd3P09027 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Hoxd3P09027 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC12.53□□□□□ -0.4
Hoxd3P09027 Gm15165-201ENSMUST00000118140 502 ntBASIC12.53□□□□□ -0.4
Hoxd3P09027 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Hoxd3P09027 Gm27459-201ENSMUST00000184860 107 ntBASIC12.53□□□□□ -0.4
Hoxd3P09027 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 CT009713.7-201ENSMUST00000224689 571 ntBASIC12.53□□□□□ -0.4
Hoxd3P09027 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Hoxd3P09027 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Hoxd3P09027 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Hoxd3P09027 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hoxd3P09027 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC12.52□□□□□ -0.4
Hoxd3P09027 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Hoxd3P09027 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Hoxd3P09027 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Hoxd3P09027 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC12.52□□□□□ -0.4
Hoxd3P09027 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Hoxd3P09027 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Hoxd3P09027 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC12.52□□□□□ -0.41
Hoxd3P09027 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Hoxd3P09027 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC12.52□□□□□ -0.41
Hoxd3P09027 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC12.52□□□□□ -0.41
Hoxd3P09027 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC12.52□□□□□ -0.41
Hoxd3P09027 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Hoxd3P09027 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Hoxd3P09027 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Hoxd3P09027 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Hoxd3P09027 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Hoxd3P09027 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Hoxd3P09027 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Hoxd3P09027 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Hoxd3P09027 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Hoxd3P09027 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Hoxd3P09027 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Hoxd3P09027 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Hoxd3P09027 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Hoxd3P09027 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Hoxd3P09027 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Hoxd3P09027 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.41
Hoxd3P09027 Gm9889-202ENSMUST00000206983 1577 ntBASIC12.52□□□□□ -0.41
Hoxd3P09027 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC12.51□□□□□ -0.41
Hoxd3P09027 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hoxd3P09027 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC12.51□□□□□ -0.41
Hoxd3P09027 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hoxd3P09027 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hoxd3P09027 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hoxd3P09027 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Hoxd3P09027 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Hoxd3P09027 Gm28659-201ENSMUST00000188013 759 ntBASIC12.51□□□□□ -0.41
Hoxd3P09027 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC12.51□□□□□ -0.41
Hoxd3P09027 Gm36967-201ENSMUST00000193814 266 ntBASIC12.51□□□□□ -0.41
Hoxd3P09027 Cmtm5-203ENSMUST00000227441 610 ntBASIC12.51□□□□□ -0.41
Hoxd3P09027 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hoxd3P09027 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC12.51□□□□□ -0.41
Hoxd3P09027 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hoxd3P09027 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Hoxd3P09027 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hoxd3P09027 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
Hoxd3P09027 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Hoxd3P09027 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hoxd3P09027 Gm26917-202ENSMUST00000192833 3329 ntBASIC12.51□□□□□ -0.41
Hoxd3P09027 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hoxd3P09027 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hoxd3P09027 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Hoxd3P09027 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hoxd3P09027 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hoxd3P09027 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hoxd3P09027 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Hoxd3P09027 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms