Protein–RNA interactions for Protein: O70209

Pdlim3, PDZ and LIM domain protein 3, mousemouse

Known RBP Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pdlim3O70209 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Pdlim3O70209 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Pdlim3O70209 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Pdlim3O70209 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Pdlim3O70209 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC14.63□□□□□ -0.07
Pdlim3O70209 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Pdlim3O70209 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Pdlim3O70209 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Pdlim3O70209 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Pdlim3O70209 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Pdlim3O70209 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC14.63□□□□□ -0.07
Pdlim3O70209 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Pdlim3O70209 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC14.63□□□□□ -0.07
Pdlim3O70209 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Pdlim3O70209 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC14.63□□□□□ -0.07
Pdlim3O70209 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Pdlim3O70209 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Pdlim3O70209 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Pdlim3O70209 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Pdlim3O70209 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Pdlim3O70209 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Pdlim3O70209 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Pdlim3O70209 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Pdlim3O70209 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Pdlim3O70209 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Pdlim3O70209 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Pdlim3O70209 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Pdlim3O70209 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC14.62□□□□□ -0.07
Pdlim3O70209 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Pdlim3O70209 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC14.62□□□□□ -0.07
Pdlim3O70209 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Pdlim3O70209 Gm36967-201ENSMUST00000193814 266 ntBASIC14.62□□□□□ -0.07
Pdlim3O70209 Gm44450-201ENSMUST00000199528 114 ntBASIC14.62□□□□□ -0.07
Pdlim3O70209 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Pdlim3O70209 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Pdlim3O70209 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Pdlim3O70209 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Pdlim3O70209 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Pdlim3O70209 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Pdlim3O70209 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Pdlim3O70209 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Pdlim3O70209 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC14.61□□□□□ -0.07
Pdlim3O70209 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Pdlim3O70209 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Pdlim3O70209 Gm44729-201ENSMUST00000206759 2052 ntBASIC14.61□□□□□ -0.07
Pdlim3O70209 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Pdlim3O70209 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Pdlim3O70209 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Pdlim3O70209 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Pdlim3O70209 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Pdlim3O70209 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Pdlim3O70209 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Pdlim3O70209 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC14.61□□□□□ -0.07
Pdlim3O70209 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Pdlim3O70209 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC14.61□□□□□ -0.07
Pdlim3O70209 Odf3b-204ENSMUST00000227834 930 ntBASIC14.61□□□□□ -0.07
Pdlim3O70209 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC14.61□□□□□ -0.07
Pdlim3O70209 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Pdlim3O70209 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Pdlim3O70209 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Pdlim3O70209 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Pdlim3O70209 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Pdlim3O70209 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Pdlim3O70209 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Pdlim3O70209 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC14.61□□□□□ -0.07
Pdlim3O70209 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Pdlim3O70209 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Pdlim3O70209 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Pdlim3O70209 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Pdlim3O70209 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Pdlim3O70209 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Pdlim3O70209 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Pdlim3O70209 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Pdlim3O70209 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Pdlim3O70209 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Pdlim3O70209 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Pdlim3O70209 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms