Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
Hmgb3O54879 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb3O54879 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb3O54879 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb3O54879 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb3O54879 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC13.42□□□□□ -0.26
Hmgb3O54879 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Hmgb3O54879 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb3O54879 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC13.42□□□□□ -0.26
Hmgb3O54879 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Hmgb3O54879 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC13.42□□□□□ -0.26
Hmgb3O54879 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb3O54879 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb3O54879 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb3O54879 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Hmgb3O54879 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC13.42□□□□□ -0.26
Hmgb3O54879 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb3O54879 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb3O54879 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb3O54879 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb3O54879 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC13.41□□□□□ -0.26
Hmgb3O54879 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb3O54879 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb3O54879 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb3O54879 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb3O54879 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb3O54879 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb3O54879 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb3O54879 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Hmgb3O54879 Gm10138-203ENSMUST00000206952 366 ntBASIC13.41□□□□□ -0.26
Hmgb3O54879 AC107711.5-202ENSMUST00000226429 702 ntBASIC13.41□□□□□ -0.26
Hmgb3O54879 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Hmgb3O54879 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb3O54879 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb3O54879 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC13.41□□□□□ -0.26
Hmgb3O54879 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC13.41□□□□□ -0.26
Hmgb3O54879 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb3O54879 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb3O54879 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC13.41□□□□□ -0.26
Hmgb3O54879 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb3O54879 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb3O54879 Gm45560-201ENSMUST00000211492 1472 ntBASIC13.41□□□□□ -0.26
Hmgb3O54879 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC13.41□□□□□ -0.26
Hmgb3O54879 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC13.41□□□□□ -0.26
Hmgb3O54879 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC13.41□□□□□ -0.26
Hmgb3O54879 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC13.41□□□□□ -0.26
Hmgb3O54879 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb3O54879 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb3O54879 Gm43072-201ENSMUST00000200283 1671 ntBASIC13.4□□□□□ -0.26
Hmgb3O54879 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Hmgb3O54879 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Hmgb3O54879 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Hmgb3O54879 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC13.4□□□□□ -0.26
Hmgb3O54879 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Hmgb3O54879 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Hmgb3O54879 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Hmgb3O54879 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Hmgb3O54879 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Hmgb3O54879 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC13.4□□□□□ -0.26
Hmgb3O54879 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC13.4□□□□□ -0.26
Hmgb3O54879 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Hmgb3O54879 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC13.4□□□□□ -0.26
Hmgb3O54879 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Hmgb3O54879 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC13.4□□□□□ -0.26
Hmgb3O54879 Gm15375-201ENSMUST00000119510 849 ntBASIC13.4□□□□□ -0.26
Hmgb3O54879 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Hmgb3O54879 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC13.4□□□□□ -0.26
Hmgb3O54879 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Hmgb3O54879 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Hmgb3O54879 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Hmgb3O54879 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Hmgb3O54879 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Hmgb3O54879 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Hmgb3O54879 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Hmgb3O54879 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Hmgb3O54879 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Hmgb3O54879 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC13.4□□□□□ -0.26
Hmgb3O54879 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Hmgb3O54879 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
Hmgb3O54879 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Hmgb3O54879 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC13.4□□□□□ -0.26
Hmgb3O54879 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC13.4□□□□□ -0.26
Hmgb3O54879 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Hmgb3O54879 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Hmgb3O54879 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
Hmgb3O54879 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC13.39□□□□□ -0.27
Hmgb3O54879 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Hmgb3O54879 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Hmgb3O54879 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Hmgb3O54879 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
Hmgb3O54879 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms