Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
Nr1i3O35627 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
Nr1i3O35627 Gm22697-201ENSMUST00000175194 63 ntBASIC17.34■□□□□ 0.37
Nr1i3O35627 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nr1i3O35627 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nr1i3O35627 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nr1i3O35627 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nr1i3O35627 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nr1i3O35627 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nr1i3O35627 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nr1i3O35627 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
Nr1i3O35627 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Nr1i3O35627 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nr1i3O35627 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nr1i3O35627 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nr1i3O35627 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Nr1i3O35627 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Nr1i3O35627 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Nr1i3O35627 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Nr1i3O35627 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Nr1i3O35627 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.37
Nr1i3O35627 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Nr1i3O35627 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Nr1i3O35627 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC17.33■□□□□ 0.36
Nr1i3O35627 Gm6433-201ENSMUST00000118634 875 ntBASIC17.33■□□□□ 0.36
Nr1i3O35627 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC17.33■□□□□ 0.36
Nr1i3O35627 Gm10052-201ENSMUST00000168019 960 ntBASIC17.33■□□□□ 0.36
Nr1i3O35627 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Nr1i3O35627 Gm18101-201ENSMUST00000215769 548 ntBASIC17.33■□□□□ 0.36
Nr1i3O35627 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Nr1i3O35627 Gm7729-201ENSMUST00000050143 801 ntBASIC17.33■□□□□ 0.36
Nr1i3O35627 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC17.33■□□□□ 0.36
Nr1i3O35627 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Nr1i3O35627 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Nr1i3O35627 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Nr1i3O35627 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Nr1i3O35627 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Nr1i3O35627 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC17.33■□□□□ 0.36
Nr1i3O35627 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1i3O35627 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1i3O35627 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1i3O35627 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Nr1i3O35627 Gm9889-202ENSMUST00000206983 1577 ntBASIC17.32■□□□□ 0.36
Nr1i3O35627 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Nr1i3O35627 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1i3O35627 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1i3O35627 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Nr1i3O35627 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1i3O35627 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1i3O35627 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1i3O35627 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Nr1i3O35627 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1i3O35627 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1i3O35627 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1i3O35627 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1i3O35627 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1i3O35627 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1i3O35627 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1i3O35627 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC17.32■□□□□ 0.36
Nr1i3O35627 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Nr1i3O35627 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC17.32■□□□□ 0.36
Nr1i3O35627 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Nr1i3O35627 AC163637.1-201ENSMUST00000215491 1894 ntBASIC17.32■□□□□ 0.36
Nr1i3O35627 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Nr1i3O35627 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1i3O35627 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1i3O35627 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1i3O35627 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC17.32■□□□□ 0.36
Nr1i3O35627 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1i3O35627 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1i3O35627 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1i3O35627 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1i3O35627 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1i3O35627 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1i3O35627 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1i3O35627 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1i3O35627 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
Nr1i3O35627 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1i3O35627 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC17.31■□□□□ 0.36
Nr1i3O35627 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1i3O35627 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1i3O35627 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC17.31■□□□□ 0.36
Nr1i3O35627 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC17.31■□□□□ 0.36
Nr1i3O35627 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1i3O35627 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1i3O35627 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1i3O35627 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1i3O35627 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1i3O35627 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1i3O35627 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1i3O35627 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1i3O35627 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1i3O35627 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Nr1i3O35627 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1i3O35627 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1i3O35627 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1i3O35627 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1i3O35627 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1i3O35627 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1i3O35627 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms